miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 31332 0.69 0.994402
Target:  5'- cUCGU-GCUguCGGGCGAGuacGGACGGg -3'
miRNA:   3'- -AGCAgCGAguGCUUGCUCuu-UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 105447 0.71 0.984226
Target:  5'- aCGUgGCg-ACGGACGAGAAcguGACGGc -3'
miRNA:   3'- aGCAgCGagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 35677 0.76 0.873542
Target:  5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3'
miRNA:   3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5'
16013 3' -49.9 NC_004065.1 + 30627 0.69 0.994402
Target:  5'- -aGUCGagcggcacCugGGACGAGAuGGACGAc -3'
miRNA:   3'- agCAGCga------GugCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 97749 0.76 0.850738
Target:  5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3'
miRNA:   3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 140057 0.68 0.998167
Target:  5'- uUCGUCGCgacggUCACG-GCGcuGAAccAGACGAu -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCu-CUU--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 226793 0.74 0.918983
Target:  5'- cCGUCGCUCugGAacaACGAauGAGACa- -3'
miRNA:   3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 89953 0.68 0.99782
Target:  5'- gCGUCGCcucaacggcuuUCugGgAGCcGGAGGGACGAc -3'
miRNA:   3'- aGCAGCG-----------AGugC-UUGcUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 96412 0.68 0.997421
Target:  5'- uUUG-CGCUCGCGAGCGGcGGcacGGCGGa -3'
miRNA:   3'- -AGCaGCGAGUGCUUGCU-CUuu-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 153067 0.68 0.996437
Target:  5'- -aGUCGgUCGacgaGGAUGAGGAGGAgGAc -3'
miRNA:   3'- agCAGCgAGUg---CUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 22492 0.68 0.996437
Target:  5'- aCGaCGCggagCGCGcGGCGAGGAGGAcCGAc -3'
miRNA:   3'- aGCaGCGa---GUGC-UUGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 184785 0.69 0.995165
Target:  5'- aCGaCGCg-ACGGGCgGAGGAGGACGGu -3'
miRNA:   3'- aGCaGCGagUGCUUG-CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 102147 0.69 0.994402
Target:  5'- gUCGUCGaucucgggCACGGugagguaccugGCGAGgcAGACGAg -3'
miRNA:   3'- -AGCAGCga------GUGCU-----------UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 29242 0.69 0.993361
Target:  5'- cCGUCGCccgccaccgccgCGCG-ACGAGAGAG-CGAc -3'
miRNA:   3'- aGCAGCGa-----------GUGCuUGCUCUUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 29845 0.69 0.992585
Target:  5'- gCGUCGUUC-CGAcCGAGGagcuGAGAUGGu -3'
miRNA:   3'- aGCAGCGAGuGCUuGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 176594 0.7 0.989013
Target:  5'- cCGUCGgUCG-GGGCGAGAAcGACGu -3'
miRNA:   3'- aGCAGCgAGUgCUUGCUCUUuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 6256 0.7 0.985971
Target:  5'- cUGUCGUgcggCGgGGACGAGAGGGAgcCGAc -3'
miRNA:   3'- aGCAGCGa---GUgCUUGCUCUUUCU--GCU- -5'
16013 3' -49.9 NC_004065.1 + 180458 0.71 0.978
Target:  5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3'
miRNA:   3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 59448 0.71 0.975568
Target:  5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3'
miRNA:   3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 175583 0.73 0.95284
Target:  5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3'
miRNA:   3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.