miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 5' -60.6 NC_004065.1 + 130162 0.66 0.855267
Target:  5'- cCGUCG-CUauccgcgaCCCCGG-CGCCAUCugguGCg -3'
miRNA:   3'- -GCAGCaGAg-------GGGGCCaGCGGUAG----CGa -5'
16013 5' -60.6 NC_004065.1 + 104146 0.66 0.855267
Target:  5'- uCGUCGUCgCCUuccgcggcggugUCGGUCGCCGcuUCGgUg -3'
miRNA:   3'- -GCAGCAGaGGG------------GGCCAGCGGU--AGCgA- -5'
16013 5' -60.6 NC_004065.1 + 170238 0.66 0.855267
Target:  5'- gGUCGUUg-CCCCGGUaucgugGCCGUgGCc -3'
miRNA:   3'- gCAGCAGagGGGGCCAg-----CGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 152596 0.66 0.855267
Target:  5'- gCGUCGUCgUCCgucagcagcgCCCGGgucacCGCCAUgUGCg -3'
miRNA:   3'- -GCAGCAG-AGG----------GGGCCa----GCGGUA-GCGa -5'
16013 5' -60.6 NC_004065.1 + 149620 0.66 0.847916
Target:  5'- gGUUGUCgUCCaccgucaCCGG-CGCCGUCGg- -3'
miRNA:   3'- gCAGCAG-AGGg------GGCCaGCGGUAGCga -5'
16013 5' -60.6 NC_004065.1 + 99455 0.66 0.840395
Target:  5'- gCG-CGcCUCgCCCGcgauugcagaaaGUUGCCGUCGCUg -3'
miRNA:   3'- -GCaGCaGAGgGGGC------------CAGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 87167 0.66 0.832709
Target:  5'- gGUCGUCcaggagCCCCugcaccgcgCGGUCGUCG-CGCg -3'
miRNA:   3'- gCAGCAGa-----GGGG---------GCCAGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 2420 0.66 0.832709
Target:  5'- -uUCGUCU-UCUCGGUCGCCc-CGCUa -3'
miRNA:   3'- gcAGCAGAgGGGGCCAGCGGuaGCGA- -5'
16013 5' -60.6 NC_004065.1 + 196092 0.66 0.824864
Target:  5'- cCGUCGaaUCCCCU-GUUGUCGUCGUc -3'
miRNA:   3'- -GCAGCagAGGGGGcCAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 76363 0.66 0.824864
Target:  5'- uGUCGaUCUCCaucgcgCCGG-CGCCGcCGCg -3'
miRNA:   3'- gCAGC-AGAGGg-----GGCCaGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 22788 0.66 0.816867
Target:  5'- uCGUCGUcCUCacgaCCGGcCaCCGUCGCUa -3'
miRNA:   3'- -GCAGCA-GAGgg--GGCCaGcGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 121070 0.66 0.816867
Target:  5'- gCGUCGUg-CCCCaGGUCGUCggCGUa -3'
miRNA:   3'- -GCAGCAgaGGGGgCCAGCGGuaGCGa -5'
16013 5' -60.6 NC_004065.1 + 7740 0.66 0.808723
Target:  5'- uCGUCGUguacaUCUaCCUGGUCucggacgucagGCCGUCGCUg -3'
miRNA:   3'- -GCAGCAg----AGG-GGGCCAG-----------CGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 194800 0.66 0.808723
Target:  5'- gCGaUCGUCgagCCCCUGaaCGCCGUgGCg -3'
miRNA:   3'- -GC-AGCAGa--GGGGGCcaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 56234 0.66 0.808723
Target:  5'- aGgcaGUUUCCCUCGGUCGaCCGgaUCGUc -3'
miRNA:   3'- gCag-CAGAGGGGGCCAGC-GGU--AGCGa -5'
16013 5' -60.6 NC_004065.1 + 21053 0.66 0.808723
Target:  5'- gGUUGcCUCCCCCGucUCGCCAcacCGUg -3'
miRNA:   3'- gCAGCaGAGGGGGCc-AGCGGUa--GCGa -5'
16013 5' -60.6 NC_004065.1 + 85558 0.67 0.80044
Target:  5'- aCGUCGUgUUCggcgCCaUGGUCGCCuUCGCg -3'
miRNA:   3'- -GCAGCAgAGG----GG-GCCAGCGGuAGCGa -5'
16013 5' -60.6 NC_004065.1 + 205487 0.67 0.80044
Target:  5'- -cUCGUCUCCgCUGc-CGUCGUCGCUg -3'
miRNA:   3'- gcAGCAGAGGgGGCcaGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 229024 0.67 0.792024
Target:  5'- aCGcUCGUCUCCCgacagCGGcUGCCAUgGCa -3'
miRNA:   3'- -GC-AGCAGAGGGg----GCCaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 85498 0.67 0.792024
Target:  5'- aGUCGgcguggCUUCCuucuuuCCGGUCGCCG-CGCc -3'
miRNA:   3'- gCAGCa-----GAGGG------GGCCAGCGGUaGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.