Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16013 | 5' | -60.6 | NC_004065.1 | + | 121070 | 0.66 | 0.816867 |
Target: 5'- gCGUCGUg-CCCCaGGUCGUCggCGUa -3' miRNA: 3'- -GCAGCAgaGGGGgCCAGCGGuaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 21053 | 0.66 | 0.808723 |
Target: 5'- gGUUGcCUCCCCCGucUCGCCAcacCGUg -3' miRNA: 3'- gCAGCaGAGGGGGCc-AGCGGUa--GCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 22788 | 0.66 | 0.816867 |
Target: 5'- uCGUCGUcCUCacgaCCGGcCaCCGUCGCUa -3' miRNA: 3'- -GCAGCA-GAGgg--GGCCaGcGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 76363 | 0.66 | 0.824864 |
Target: 5'- uGUCGaUCUCCaucgcgCCGG-CGCCGcCGCg -3' miRNA: 3'- gCAGC-AGAGGg-----GGCCaGCGGUaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 196092 | 0.66 | 0.824864 |
Target: 5'- cCGUCGaaUCCCCU-GUUGUCGUCGUc -3' miRNA: 3'- -GCAGCagAGGGGGcCAGCGGUAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 99455 | 0.66 | 0.840395 |
Target: 5'- gCG-CGcCUCgCCCGcgauugcagaaaGUUGCCGUCGCUg -3' miRNA: 3'- -GCaGCaGAGgGGGC------------CAGCGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 149620 | 0.66 | 0.847916 |
Target: 5'- gGUUGUCgUCCaccgucaCCGG-CGCCGUCGg- -3' miRNA: 3'- gCAGCAG-AGGg------GGCCaGCGGUAGCga -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 170238 | 0.66 | 0.855267 |
Target: 5'- gGUCGUUg-CCCCGGUaucgugGCCGUgGCc -3' miRNA: 3'- gCAGCAGagGGGGCCAg-----CGGUAgCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 104146 | 0.66 | 0.855267 |
Target: 5'- uCGUCGUCgCCUuccgcggcggugUCGGUCGCCGcuUCGgUg -3' miRNA: 3'- -GCAGCAGaGGG------------GGCCAGCGGU--AGCgA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 194800 | 0.66 | 0.808723 |
Target: 5'- gCGaUCGUCgagCCCCUGaaCGCCGUgGCg -3' miRNA: 3'- -GC-AGCAGa--GGGGGCcaGCGGUAgCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 130162 | 0.66 | 0.855267 |
Target: 5'- cCGUCG-CUauccgcgaCCCCGG-CGCCAUCugguGCg -3' miRNA: 3'- -GCAGCaGAg-------GGGGCCaGCGGUAG----CGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 56234 | 0.66 | 0.808723 |
Target: 5'- aGgcaGUUUCCCUCGGUCGaCCGgaUCGUc -3' miRNA: 3'- gCag-CAGAGGGGGCCAGC-GGU--AGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 7740 | 0.66 | 0.808723 |
Target: 5'- uCGUCGUguacaUCUaCCUGGUCucggacgucagGCCGUCGCUg -3' miRNA: 3'- -GCAGCAg----AGG-GGGCCAG-----------CGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 152596 | 0.66 | 0.855267 |
Target: 5'- gCGUCGUCgUCCgucagcagcgCCCGGgucacCGCCAUgUGCg -3' miRNA: 3'- -GCAGCAG-AGG----------GGGCCa----GCGGUA-GCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 87167 | 0.66 | 0.832709 |
Target: 5'- gGUCGUCcaggagCCCCugcaccgcgCGGUCGUCG-CGCg -3' miRNA: 3'- gCAGCAGa-----GGGG---------GCCAGCGGUaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 2420 | 0.66 | 0.832709 |
Target: 5'- -uUCGUCU-UCUCGGUCGCCc-CGCUa -3' miRNA: 3'- gcAGCAGAgGGGGCCAGCGGuaGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 127462 | 0.67 | 0.774823 |
Target: 5'- uCGUCGaUCUCCCCggggaGGUgGUCGggCGCg -3' miRNA: 3'- -GCAGC-AGAGGGGg----CCAgCGGUa-GCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 110129 | 0.67 | 0.774823 |
Target: 5'- aG-CGUCUUCUCCGGccgCGCCGgcaaguucUCGCUc -3' miRNA: 3'- gCaGCAGAGGGGGCCa--GCGGU--------AGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 168683 | 0.67 | 0.757178 |
Target: 5'- --cCGUCUUCgCCCgGGUCGCCGcggcucUCGCc -3' miRNA: 3'- gcaGCAGAGG-GGG-CCAGCGGU------AGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 205487 | 0.67 | 0.80044 |
Target: 5'- -cUCGUCUCCgCUGc-CGUCGUCGCUg -3' miRNA: 3'- gcAGCAGAGGgGGCcaGCGGUAGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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