miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 5' -60.6 NC_004065.1 + 62015 1.07 0.002639
Target:  5'- uCGUCGUCUCCCCCGGUCGCCAUCGCUg -3'
miRNA:   3'- -GCAGCAGAGGGGGCCAGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 88265 0.76 0.294126
Target:  5'- uCGUCGUC-CCCCCGcaCGUCGUCGCc -3'
miRNA:   3'- -GCAGCAGaGGGGGCcaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 146438 0.76 0.300564
Target:  5'- cCGUCuUCUUCCCCGGcuucccCGCCGUCGCc -3'
miRNA:   3'- -GCAGcAGAGGGGGCCa-----GCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 195421 0.75 0.35597
Target:  5'- aCGUaCG-CUCCCgCCGcGUCGCCGUCGUc -3'
miRNA:   3'- -GCA-GCaGAGGG-GGC-CAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 41361 0.72 0.513551
Target:  5'- cCGUCGUCUCCCgCCGcG-CGCCcUCGa- -3'
miRNA:   3'- -GCAGCAGAGGG-GGC-CaGCGGuAGCga -5'
16013 5' -60.6 NC_004065.1 + 209307 0.72 0.522685
Target:  5'- cCGUCGUCgCCgUCGGU-GCCGUCGUg -3'
miRNA:   3'- -GCAGCAGaGGgGGCCAgCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 96262 0.71 0.549509
Target:  5'- aGUCGggaUUCCCCgGGUUGCCugaagaaGUCGCa -3'
miRNA:   3'- gCAGCa--GAGGGGgCCAGCGG-------UAGCGa -5'
16013 5' -60.6 NC_004065.1 + 183838 0.71 0.569197
Target:  5'- uGUCGUUcggCCCCCa--CGCCGUCGCg -3'
miRNA:   3'- gCAGCAGa--GGGGGccaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 205353 0.7 0.591902
Target:  5'- gCGUCGUCgCCUCCgauucuaaccucgagGGUCGCCAgaacaccagaUCGCg -3'
miRNA:   3'- -GCAGCAGaGGGGG---------------CCAGCGGU----------AGCGa -5'
16013 5' -60.6 NC_004065.1 + 40378 0.7 0.597604
Target:  5'- uCGUCGUCaugUCCUCCGGguccucCGCCGUCa-- -3'
miRNA:   3'- -GCAGCAG---AGGGGGCCa-----GCGGUAGcga -5'
16013 5' -60.6 NC_004065.1 + 96146 0.7 0.616663
Target:  5'- cCGUCG-UUCCgCCCGGcgCGCCGUCuuGCg -3'
miRNA:   3'- -GCAGCaGAGG-GGGCCa-GCGGUAG--CGa -5'
16013 5' -60.6 NC_004065.1 + 18250 0.7 0.616663
Target:  5'- aGUCGUCUCCCgaCUGGagGC-GUCGCUc -3'
miRNA:   3'- gCAGCAGAGGG--GGCCagCGgUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 88020 0.7 0.616663
Target:  5'- aCGUCGUCgacgaUCCgCCgCGGuaucgucgucaUCGCCGUCGCc -3'
miRNA:   3'- -GCAGCAG-----AGG-GG-GCC-----------AGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 138347 0.7 0.62621
Target:  5'- uGUCGcUCUgcgacaaggcgaCCCCC-GUCGUCAUCGCg -3'
miRNA:   3'- gCAGC-AGA------------GGGGGcCAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 109915 0.68 0.702173
Target:  5'- -cUCGUC-CgCCgCGGcCGCCGUCGCg -3'
miRNA:   3'- gcAGCAGaGgGG-GCCaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 115914 0.68 0.711512
Target:  5'- cCGUCGUCggCCUCGGcCGgCAgcUCGCUg -3'
miRNA:   3'- -GCAGCAGagGGGGCCaGCgGU--AGCGA- -5'
16013 5' -60.6 NC_004065.1 + 56018 0.68 0.718942
Target:  5'- uCGUCGUCaugcugccggagCUCCUGuucgucaucGUCGCCGUCGCg -3'
miRNA:   3'- -GCAGCAGa-----------GGGGGC---------CAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 66740 0.68 0.730007
Target:  5'- cCGUCGga--CCCCGG-CGgCGUCGCg -3'
miRNA:   3'- -GCAGCagagGGGGCCaGCgGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 225936 0.68 0.739148
Target:  5'- cCGUCGUCUCCCgCGG-CGgguGUUGCUc -3'
miRNA:   3'- -GCAGCAGAGGGgGCCaGCgg-UAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 120315 0.68 0.739148
Target:  5'- gCGUUG-C-CCCCCgagGGUCGCCG-CGCg -3'
miRNA:   3'- -GCAGCaGaGGGGG---CCAGCGGUaGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.