Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16013 | 5' | -60.6 | NC_004065.1 | + | 2420 | 0.66 | 0.832709 |
Target: 5'- -uUCGUCU-UCUCGGUCGCCc-CGCUa -3' miRNA: 3'- gcAGCAGAgGGGGCCAGCGGuaGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 7740 | 0.66 | 0.808723 |
Target: 5'- uCGUCGUguacaUCUaCCUGGUCucggacgucagGCCGUCGCUg -3' miRNA: 3'- -GCAGCAg----AGG-GGGCCAG-----------CGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 18250 | 0.7 | 0.616663 |
Target: 5'- aGUCGUCUCCCgaCUGGagGC-GUCGCUc -3' miRNA: 3'- gCAGCAGAGGG--GGCCagCGgUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 21053 | 0.66 | 0.808723 |
Target: 5'- gGUUGcCUCCCCCGucUCGCCAcacCGUg -3' miRNA: 3'- gCAGCaGAGGGGGCc-AGCGGUa--GCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 22788 | 0.66 | 0.816867 |
Target: 5'- uCGUCGUcCUCacgaCCGGcCaCCGUCGCUa -3' miRNA: 3'- -GCAGCA-GAGgg--GGCCaGcGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 40378 | 0.7 | 0.597604 |
Target: 5'- uCGUCGUCaugUCCUCCGGguccucCGCCGUCa-- -3' miRNA: 3'- -GCAGCAG---AGGGGGCCa-----GCGGUAGcga -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 41361 | 0.72 | 0.513551 |
Target: 5'- cCGUCGUCUCCCgCCGcG-CGCCcUCGa- -3' miRNA: 3'- -GCAGCAGAGGG-GGC-CaGCGGuAGCga -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 56018 | 0.68 | 0.718942 |
Target: 5'- uCGUCGUCaugcugccggagCUCCUGuucgucaucGUCGCCGUCGCg -3' miRNA: 3'- -GCAGCAGa-----------GGGGGC---------CAGCGGUAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 56234 | 0.66 | 0.808723 |
Target: 5'- aGgcaGUUUCCCUCGGUCGaCCGgaUCGUc -3' miRNA: 3'- gCag-CAGAGGGGGCCAGC-GGU--AGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 62015 | 1.07 | 0.002639 |
Target: 5'- uCGUCGUCUCCCCCGGUCGCCAUCGCUg -3' miRNA: 3'- -GCAGCAGAGGGGGCCAGCGGUAGCGA- -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 66740 | 0.68 | 0.730007 |
Target: 5'- cCGUCGga--CCCCGG-CGgCGUCGCg -3' miRNA: 3'- -GCAGCagagGGGGCCaGCgGUAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 76363 | 0.66 | 0.824864 |
Target: 5'- uGUCGaUCUCCaucgcgCCGG-CGCCGcCGCg -3' miRNA: 3'- gCAGC-AGAGGg-----GGCCaGCGGUaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 85498 | 0.67 | 0.792024 |
Target: 5'- aGUCGgcguggCUUCCuucuuuCCGGUCGCCG-CGCc -3' miRNA: 3'- gCAGCa-----GAGGG------GGCCAGCGGUaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 85558 | 0.67 | 0.80044 |
Target: 5'- aCGUCGUgUUCggcgCCaUGGUCGCCuUCGCg -3' miRNA: 3'- -GCAGCAgAGG----GG-GCCAGCGGuAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 87167 | 0.66 | 0.832709 |
Target: 5'- gGUCGUCcaggagCCCCugcaccgcgCGGUCGUCG-CGCg -3' miRNA: 3'- gCAGCAGa-----GGGG---------GCCAGCGGUaGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 88020 | 0.7 | 0.616663 |
Target: 5'- aCGUCGUCgacgaUCCgCCgCGGuaucgucgucaUCGCCGUCGCc -3' miRNA: 3'- -GCAGCAG-----AGG-GG-GCC-----------AGCGGUAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 88265 | 0.76 | 0.294126 |
Target: 5'- uCGUCGUC-CCCCCGcaCGUCGUCGCc -3' miRNA: 3'- -GCAGCAGaGGGGGCcaGCGGUAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 96146 | 0.7 | 0.616663 |
Target: 5'- cCGUCG-UUCCgCCCGGcgCGCCGUCuuGCg -3' miRNA: 3'- -GCAGCaGAGG-GGGCCa-GCGGUAG--CGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 96262 | 0.71 | 0.549509 |
Target: 5'- aGUCGggaUUCCCCgGGUUGCCugaagaaGUCGCa -3' miRNA: 3'- gCAGCa--GAGGGGgCCAGCGG-------UAGCGa -5' |
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16013 | 5' | -60.6 | NC_004065.1 | + | 99455 | 0.66 | 0.840395 |
Target: 5'- gCG-CGcCUCgCCCGcgauugcagaaaGUUGCCGUCGCUg -3' miRNA: 3'- -GCaGCaGAGgGGGC------------CAGCGGUAGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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