miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 5' -60.6 NC_004065.1 + 229024 0.67 0.792024
Target:  5'- aCGcUCGUCUCCCgacagCGGcUGCCAUgGCa -3'
miRNA:   3'- -GC-AGCAGAGGGg----GCCaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 225936 0.68 0.739148
Target:  5'- cCGUCGUCUCCCgCGG-CGgguGUUGCUc -3'
miRNA:   3'- -GCAGCAGAGGGgGCCaGCgg-UAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 209307 0.72 0.522685
Target:  5'- cCGUCGUCgCCgUCGGU-GCCGUCGUg -3'
miRNA:   3'- -GCAGCAGaGGgGGCCAgCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 205487 0.67 0.80044
Target:  5'- -cUCGUCUCCgCUGc-CGUCGUCGCUg -3'
miRNA:   3'- gcAGCAGAGGgGGCcaGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 205353 0.7 0.591902
Target:  5'- gCGUCGUCgCCUCCgauucuaaccucgagGGUCGCCAgaacaccagaUCGCg -3'
miRNA:   3'- -GCAGCAGaGGGGG---------------CCAGCGGU----------AGCGa -5'
16013 5' -60.6 NC_004065.1 + 196092 0.66 0.824864
Target:  5'- cCGUCGaaUCCCCU-GUUGUCGUCGUc -3'
miRNA:   3'- -GCAGCagAGGGGGcCAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 195421 0.75 0.35597
Target:  5'- aCGUaCG-CUCCCgCCGcGUCGCCGUCGUc -3'
miRNA:   3'- -GCA-GCaGAGGG-GGC-CAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 194800 0.66 0.808723
Target:  5'- gCGaUCGUCgagCCCCUGaaCGCCGUgGCg -3'
miRNA:   3'- -GC-AGCAGa--GGGGGCcaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 183838 0.71 0.569197
Target:  5'- uGUCGUUcggCCCCCa--CGCCGUCGCg -3'
miRNA:   3'- gCAGCAGa--GGGGGccaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 170238 0.66 0.855267
Target:  5'- gGUCGUUg-CCCCGGUaucgugGCCGUgGCc -3'
miRNA:   3'- gCAGCAGagGGGGCCAg-----CGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 168683 0.67 0.757178
Target:  5'- --cCGUCUUCgCCCgGGUCGCCGcggcucUCGCc -3'
miRNA:   3'- gcaGCAGAGG-GGG-CCAGCGGU------AGCGa -5'
16013 5' -60.6 NC_004065.1 + 152596 0.66 0.855267
Target:  5'- gCGUCGUCgUCCgucagcagcgCCCGGgucacCGCCAUgUGCg -3'
miRNA:   3'- -GCAGCAG-AGG----------GGGCCa----GCGGUA-GCGa -5'
16013 5' -60.6 NC_004065.1 + 149620 0.66 0.847916
Target:  5'- gGUUGUCgUCCaccgucaCCGG-CGCCGUCGg- -3'
miRNA:   3'- gCAGCAG-AGGg------GGCCaGCGGUAGCga -5'
16013 5' -60.6 NC_004065.1 + 146438 0.76 0.300564
Target:  5'- cCGUCuUCUUCCCCGGcuucccCGCCGUCGCc -3'
miRNA:   3'- -GCAGcAGAGGGGGCCa-----GCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 138347 0.7 0.62621
Target:  5'- uGUCGcUCUgcgacaaggcgaCCCCC-GUCGUCAUCGCg -3'
miRNA:   3'- gCAGC-AGA------------GGGGGcCAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 130162 0.66 0.855267
Target:  5'- cCGUCG-CUauccgcgaCCCCGG-CGCCAUCugguGCg -3'
miRNA:   3'- -GCAGCaGAg-------GGGGCCaGCGGUAG----CGa -5'
16013 5' -60.6 NC_004065.1 + 127462 0.67 0.774823
Target:  5'- uCGUCGaUCUCCCCggggaGGUgGUCGggCGCg -3'
miRNA:   3'- -GCAGC-AGAGGGGg----CCAgCGGUa-GCGa -5'
16013 5' -60.6 NC_004065.1 + 121070 0.66 0.816867
Target:  5'- gCGUCGUg-CCCCaGGUCGUCggCGUa -3'
miRNA:   3'- -GCAGCAgaGGGGgCCAGCGGuaGCGa -5'
16013 5' -60.6 NC_004065.1 + 120315 0.68 0.739148
Target:  5'- gCGUUG-C-CCCCCgagGGUCGCCG-CGCg -3'
miRNA:   3'- -GCAGCaGaGGGGG---CCAGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 115914 0.68 0.711512
Target:  5'- cCGUCGUCggCCUCGGcCGgCAgcUCGCUg -3'
miRNA:   3'- -GCAGCAGagGGGGCCaGCgGU--AGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.