miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 5' -60.6 NC_004065.1 + 130162 0.66 0.855267
Target:  5'- cCGUCG-CUauccgcgaCCCCGG-CGCCAUCugguGCg -3'
miRNA:   3'- -GCAGCaGAg-------GGGGCCaGCGGUAG----CGa -5'
16013 5' -60.6 NC_004065.1 + 21053 0.66 0.808723
Target:  5'- gGUUGcCUCCCCCGucUCGCCAcacCGUg -3'
miRNA:   3'- gCAGCaGAGGGGGCc-AGCGGUa--GCGa -5'
16013 5' -60.6 NC_004065.1 + 22788 0.66 0.816867
Target:  5'- uCGUCGUcCUCacgaCCGGcCaCCGUCGCUa -3'
miRNA:   3'- -GCAGCA-GAGgg--GGCCaGcGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 76363 0.66 0.824864
Target:  5'- uGUCGaUCUCCaucgcgCCGG-CGCCGcCGCg -3'
miRNA:   3'- gCAGC-AGAGGg-----GGCCaGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 196092 0.66 0.824864
Target:  5'- cCGUCGaaUCCCCU-GUUGUCGUCGUc -3'
miRNA:   3'- -GCAGCagAGGGGGcCAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 99455 0.66 0.840395
Target:  5'- gCG-CGcCUCgCCCGcgauugcagaaaGUUGCCGUCGCUg -3'
miRNA:   3'- -GCaGCaGAGgGGGC------------CAGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 149620 0.66 0.847916
Target:  5'- gGUUGUCgUCCaccgucaCCGG-CGCCGUCGg- -3'
miRNA:   3'- gCAGCAG-AGGg------GGCCaGCGGUAGCga -5'
16013 5' -60.6 NC_004065.1 + 170238 0.66 0.855267
Target:  5'- gGUCGUUg-CCCCGGUaucgugGCCGUgGCc -3'
miRNA:   3'- gCAGCAGagGGGGCCAg-----CGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 104146 0.66 0.855267
Target:  5'- uCGUCGUCgCCUuccgcggcggugUCGGUCGCCGcuUCGgUg -3'
miRNA:   3'- -GCAGCAGaGGG------------GGCCAGCGGU--AGCgA- -5'
16013 5' -60.6 NC_004065.1 + 194800 0.66 0.808723
Target:  5'- gCGaUCGUCgagCCCCUGaaCGCCGUgGCg -3'
miRNA:   3'- -GC-AGCAGa--GGGGGCcaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 85498 0.67 0.792024
Target:  5'- aGUCGgcguggCUUCCuucuuuCCGGUCGCCG-CGCc -3'
miRNA:   3'- gCAGCa-----GAGGG------GGCCAGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 110129 0.67 0.774823
Target:  5'- aG-CGUCUUCUCCGGccgCGCCGgcaaguucUCGCUc -3'
miRNA:   3'- gCaGCAGAGGGGGCCa--GCGGU--------AGCGA- -5'
16013 5' -60.6 NC_004065.1 + 88265 0.76 0.294126
Target:  5'- uCGUCGUC-CCCCCGcaCGUCGUCGCc -3'
miRNA:   3'- -GCAGCAGaGGGGGCcaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 146438 0.76 0.300564
Target:  5'- cCGUCuUCUUCCCCGGcuucccCGCCGUCGCc -3'
miRNA:   3'- -GCAGcAGAGGGGGCCa-----GCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 195421 0.75 0.35597
Target:  5'- aCGUaCG-CUCCCgCCGcGUCGCCGUCGUc -3'
miRNA:   3'- -GCA-GCaGAGGG-GGC-CAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 41361 0.72 0.513551
Target:  5'- cCGUCGUCUCCCgCCGcG-CGCCcUCGa- -3'
miRNA:   3'- -GCAGCAGAGGG-GGC-CaGCGGuAGCga -5'
16013 5' -60.6 NC_004065.1 + 40378 0.7 0.597604
Target:  5'- uCGUCGUCaugUCCUCCGGguccucCGCCGUCa-- -3'
miRNA:   3'- -GCAGCAG---AGGGGGCCa-----GCGGUAGcga -5'
16013 5' -60.6 NC_004065.1 + 18250 0.7 0.616663
Target:  5'- aGUCGUCUCCCgaCUGGagGC-GUCGCUc -3'
miRNA:   3'- gCAGCAGAGGG--GGCCagCGgUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 109915 0.68 0.702173
Target:  5'- -cUCGUC-CgCCgCGGcCGCCGUCGCg -3'
miRNA:   3'- gcAGCAGaGgGG-GCCaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 225936 0.68 0.739148
Target:  5'- cCGUCGUCUCCCgCGG-CGgguGUUGCUc -3'
miRNA:   3'- -GCAGCAGAGGGgGCCaGCgg-UAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.