miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 5' -60.6 NC_004065.1 + 209307 0.72 0.522685
Target:  5'- cCGUCGUCgCCgUCGGU-GCCGUCGUg -3'
miRNA:   3'- -GCAGCAGaGGgGGCCAgCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 7740 0.66 0.808723
Target:  5'- uCGUCGUguacaUCUaCCUGGUCucggacgucagGCCGUCGCUg -3'
miRNA:   3'- -GCAGCAg----AGG-GGGCCAG-----------CGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 2420 0.66 0.832709
Target:  5'- -uUCGUCU-UCUCGGUCGCCc-CGCUa -3'
miRNA:   3'- gcAGCAGAgGGGGCCAGCGGuaGCGA- -5'
16013 5' -60.6 NC_004065.1 + 152596 0.66 0.855267
Target:  5'- gCGUCGUCgUCCgucagcagcgCCCGGgucacCGCCAUgUGCg -3'
miRNA:   3'- -GCAGCAG-AGG----------GGGCCa----GCGGUA-GCGa -5'
16013 5' -60.6 NC_004065.1 + 96146 0.7 0.616663
Target:  5'- cCGUCG-UUCCgCCCGGcgCGCCGUCuuGCg -3'
miRNA:   3'- -GCAGCaGAGG-GGGCCa-GCGGUAG--CGa -5'
16013 5' -60.6 NC_004065.1 + 88020 0.7 0.616663
Target:  5'- aCGUCGUCgacgaUCCgCCgCGGuaucgucgucaUCGCCGUCGCc -3'
miRNA:   3'- -GCAGCAG-----AGG-GG-GCC-----------AGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 115914 0.68 0.711512
Target:  5'- cCGUCGUCggCCUCGGcCGgCAgcUCGCUg -3'
miRNA:   3'- -GCAGCAGagGGGGCCaGCgGU--AGCGA- -5'
16013 5' -60.6 NC_004065.1 + 56018 0.68 0.718942
Target:  5'- uCGUCGUCaugcugccggagCUCCUGuucgucaucGUCGCCGUCGCg -3'
miRNA:   3'- -GCAGCAGa-----------GGGGGC---------CAGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 168683 0.67 0.757178
Target:  5'- --cCGUCUUCgCCCgGGUCGCCGcggcucUCGCc -3'
miRNA:   3'- gcaGCAGAGG-GGG-CCAGCGGU------AGCGa -5'
16013 5' -60.6 NC_004065.1 + 56234 0.66 0.808723
Target:  5'- aGgcaGUUUCCCUCGGUCGaCCGgaUCGUc -3'
miRNA:   3'- gCag-CAGAGGGGGCCAGC-GGU--AGCGa -5'
16013 5' -60.6 NC_004065.1 + 229024 0.67 0.792024
Target:  5'- aCGcUCGUCUCCCgacagCGGcUGCCAUgGCa -3'
miRNA:   3'- -GC-AGCAGAGGGg----GCCaGCGGUAgCGa -5'
16013 5' -60.6 NC_004065.1 + 120315 0.68 0.739148
Target:  5'- gCGUUG-C-CCCCCgagGGUCGCCG-CGCg -3'
miRNA:   3'- -GCAGCaGaGGGGG---CCAGCGGUaGCGa -5'
16013 5' -60.6 NC_004065.1 + 96262 0.71 0.549509
Target:  5'- aGUCGggaUUCCCCgGGUUGCCugaagaaGUCGCa -3'
miRNA:   3'- gCAGCa--GAGGGGgCCAGCGG-------UAGCGa -5'
16013 5' -60.6 NC_004065.1 + 205487 0.67 0.80044
Target:  5'- -cUCGUCUCCgCUGc-CGUCGUCGCUg -3'
miRNA:   3'- gcAGCAGAGGgGGCcaGCGGUAGCGA- -5'
16013 5' -60.6 NC_004065.1 + 183838 0.71 0.569197
Target:  5'- uGUCGUUcggCCCCCa--CGCCGUCGCg -3'
miRNA:   3'- gCAGCAGa--GGGGGccaGCGGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 66740 0.68 0.730007
Target:  5'- cCGUCGga--CCCCGG-CGgCGUCGCg -3'
miRNA:   3'- -GCAGCagagGGGGCCaGCgGUAGCGa -5'
16013 5' -60.6 NC_004065.1 + 85558 0.67 0.80044
Target:  5'- aCGUCGUgUUCggcgCCaUGGUCGCCuUCGCg -3'
miRNA:   3'- -GCAGCAgAGG----GG-GCCAGCGGuAGCGa -5'
16013 5' -60.6 NC_004065.1 + 121070 0.66 0.816867
Target:  5'- gCGUCGUg-CCCCaGGUCGUCggCGUa -3'
miRNA:   3'- -GCAGCAgaGGGGgCCAGCGGuaGCGa -5'
16013 5' -60.6 NC_004065.1 + 205353 0.7 0.591902
Target:  5'- gCGUCGUCgCCUCCgauucuaaccucgagGGUCGCCAgaacaccagaUCGCg -3'
miRNA:   3'- -GCAGCAGaGGGGG---------------CCAGCGGU----------AGCGa -5'
16013 5' -60.6 NC_004065.1 + 138347 0.7 0.62621
Target:  5'- uGUCGcUCUgcgacaaggcgaCCCCC-GUCGUCAUCGCg -3'
miRNA:   3'- gCAGC-AGA------------GGGGGcCAGCGGUAGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.