miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 32809 0.65 0.751491
Target:  5'- gUCG-UCGUCCUCGuagccgucGGGCCGCucguccgagaagguGaGCCGGu -3'
miRNA:   3'- -GGCuGGCAGGAGU--------CCCGGCG--------------C-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 38321 0.66 0.745377
Target:  5'- cCCGAUUcUCCcgCGGGGUgGUGgGCUGGg -3'
miRNA:   3'- -GGCUGGcAGGa-GUCCCGgCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 189193 0.66 0.745377
Target:  5'- cCUGAUgGacaaCgUCAGGGaCGCGGCCGa -3'
miRNA:   3'- -GGCUGgCa---GgAGUCCCgGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 229344 0.66 0.745377
Target:  5'- cCCgGGCgGUCgCUCGaccagcgagcGGGUgcucgcuacgCGCGGCCGGa -3'
miRNA:   3'- -GG-CUGgCAG-GAGU----------CCCG----------GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 66125 0.66 0.745377
Target:  5'- aCCGaggcGCUGgcgcgCuGGGCCGCGGaCCGGc -3'
miRNA:   3'- -GGC----UGGCagga-GuCCCGGCGCC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 59126 0.66 0.736574
Target:  5'- cCUGACCGUCCUgcuGGUCuuGGCCGc -3'
miRNA:   3'- -GGCUGGCAGGAgucCCGGcgCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 151387 0.66 0.736574
Target:  5'- gCGGCCGaUCUCuuGGGUgGCGGaggCGGg -3'
miRNA:   3'- gGCUGGCaGGAGu-CCCGgCGCCg--GCC- -5'
16018 3' -63.8 NC_004065.1 + 119242 0.66 0.736574
Target:  5'- aCUGugCGcUCCgaaacGGGCCGCGcGCCu- -3'
miRNA:   3'- -GGCugGC-AGGagu--CCCGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 163271 0.66 0.731256
Target:  5'- -aGACCGUCUcuUCggucgcgacgccgccGGGGuCCGaCGGCaCGGg -3'
miRNA:   3'- ggCUGGCAGG--AG---------------UCCC-GGC-GCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 212993 0.66 0.727696
Target:  5'- cCUGGUCGUaCUCAaGGUCGUGGUCGGg -3'
miRNA:   3'- -GGCUGGCAgGAGUcCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 135324 0.66 0.718751
Target:  5'- cUCGAgCCGcCCUCcaaggucaGGGGCCGCgagaucaaGGCCa- -3'
miRNA:   3'- -GGCU-GGCaGGAG--------UCCCGGCG--------CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 148852 0.66 0.718751
Target:  5'- gCGGCCG-CCgcgaucgaGGaGGCgGCGGCgGGg -3'
miRNA:   3'- gGCUGGCaGGag------UC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 122855 0.66 0.718751
Target:  5'- cUCGACCGcCCUCuGGcGGCagaGCGaGuuGGa -3'
miRNA:   3'- -GGCUGGCaGGAG-UC-CCGg--CGC-CggCC- -5'
16018 3' -63.8 NC_004065.1 + 115155 0.66 0.718751
Target:  5'- aCCGccAUCGUCgUCGGGcGCCGCGccCCGa -3'
miRNA:   3'- -GGC--UGGCAGgAGUCC-CGGCGCc-GGCc -5'
16018 3' -63.8 NC_004065.1 + 159148 0.66 0.709745
Target:  5'- gCGAgUUGUCCagCAGGGUCGCcaGCUGGg -3'
miRNA:   3'- gGCU-GGCAGGa-GUCCCGGCGc-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 128711 0.66 0.709745
Target:  5'- uUCGGCUccgCUUCAGGGagagGCGGCUGGc -3'
miRNA:   3'- -GGCUGGca-GGAGUCCCgg--CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120574 0.66 0.709745
Target:  5'- gCGGgCGggaCCUCcGGcGCCGgucuCGGCCGGg -3'
miRNA:   3'- gGCUgGCa--GGAGuCC-CGGC----GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 8744 0.66 0.709745
Target:  5'- aCGACCGgaggCCgUGGuGGCgGCGGCaGGg -3'
miRNA:   3'- gGCUGGCa---GGaGUC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 21316 0.66 0.700686
Target:  5'- aCGACCG-CCUCGGcGUgCGCGGCgGu -3'
miRNA:   3'- gGCUGGCaGGAGUCcCG-GCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 119060 0.66 0.700686
Target:  5'- uCUGAcCCGUCCUCAGcugcacGGUgCGCGGCaugaccacgCGGa -3'
miRNA:   3'- -GGCU-GGCAGGAGUC------CCG-GCGCCG---------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.