miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 148852 0.66 0.718751
Target:  5'- gCGGCCG-CCgcgaucgaGGaGGCgGCGGCgGGg -3'
miRNA:   3'- gGCUGGCaGGag------UC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 223860 0.67 0.654813
Target:  5'- cUCGGCCGcCCggCccGGCCaucuCGGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGa-GucCCGGc---GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 470 0.67 0.673251
Target:  5'- cUCGcCUGagucagCCUCcGGGCCGCGcGCCGc -3'
miRNA:   3'- -GGCuGGCa-----GGAGuCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 59691 0.67 0.69158
Target:  5'- uCCGAgUCGUCgUagaAGGGCgccgaGCGGCCGcGg -3'
miRNA:   3'- -GGCU-GGCAGgAg--UCCCGg----CGCCGGC-C- -5'
16018 3' -63.8 NC_004065.1 + 60082 0.67 0.69158
Target:  5'- gCCGcGCuCGUCgUCgucgaagaggucGGGGUagaaGCGGCCGGc -3'
miRNA:   3'- -GGC-UG-GCAGgAG------------UCCCGg---CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 110302 0.67 0.69158
Target:  5'- cCCGGCCGUCacgguCUCGcaGCUcUGGCCGGg -3'
miRNA:   3'- -GGCUGGCAG-----GAGUccCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 83280 0.67 0.654813
Target:  5'- cUCGACCGgCCUC---GCgGCGGCCGa -3'
miRNA:   3'- -GGCUGGCaGGAGuccCGgCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 26892 0.67 0.654813
Target:  5'- gCCGGCCGgUC-CAGaGGCCGCucgaccgcacGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGaGUC-CCGGCGc---------CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 110127 0.67 0.654813
Target:  5'- -aGAgCGUCUUCuccGGCCGCG-CCGGc -3'
miRNA:   3'- ggCUgGCAGGAGuc-CCGGCGCcGGCC- -5'
16018 3' -63.8 NC_004065.1 + 189105 0.67 0.682432
Target:  5'- cCCGGugucuCUGUgCUCAGGGCC-CGgacaaGCCGGc -3'
miRNA:   3'- -GGCU-----GGCAgGAGUCCCGGcGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 199652 0.67 0.645569
Target:  5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3'
miRNA:   3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 60894 0.67 0.664043
Target:  5'- gCGAgCGU-CUCGGgaacugcuGGCCGCGGCCc- -3'
miRNA:   3'- gGCUgGCAgGAGUC--------CCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 208034 0.67 0.664043
Target:  5'- aUGACCGUCggCGuGGCCGUGGCgGc -3'
miRNA:   3'- gGCUGGCAGgaGUcCCGGCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 129430 0.67 0.682432
Target:  5'- gCUGugCG-CCUCGGaccgguacGuGCCGCGGgCGGa -3'
miRNA:   3'- -GGCugGCaGGAGUC--------C-CGGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 35396 0.67 0.672332
Target:  5'- -gGACCGUCaUCGGcGCCGUGGgagaguaCCGGg -3'
miRNA:   3'- ggCUGGCAGgAGUCcCGGCGCC-------GGCC- -5'
16018 3' -63.8 NC_004065.1 + 136468 0.67 0.673252
Target:  5'- gCCGAgCCGgaaagCCg-GGGaGCCGaGGCCGGu -3'
miRNA:   3'- -GGCU-GGCa----GGagUCC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 211144 0.67 0.682432
Target:  5'- uCUGGCCGUUCggGGGGgaGCGggcguGCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCCCggCGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 78625 0.67 0.642794
Target:  5'- cCCGACCGacccgCCUCcGccacccaagagaucGGCCGCcagcgcagcGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGAGuC--------------CCGGCG---------CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 116810 0.67 0.645569
Target:  5'- uUGGCCGguaCCgacCGGGGCagCGUGGCCGu -3'
miRNA:   3'- gGCUGGCa--GGa--GUCCCG--GCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 113285 0.67 0.65389
Target:  5'- gCgGAUCGUCUUCAccaugacGGGCgacgccgcuCGCGcGCCGGa -3'
miRNA:   3'- -GgCUGGCAGGAGU-------CCCG---------GCGC-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.