miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 102532 0.68 0.617808
Target:  5'- aCGACgcgcgccuUGUCCUCGucgguGGcGCCGgGGUCGGg -3'
miRNA:   3'- gGCUG--------GCAGGAGU-----CC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 209546 0.68 0.62706
Target:  5'- cCCGACCGcgggaCUgaaGGaGGCC-CGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGag-UC-CCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 115785 0.68 0.636316
Target:  5'- uUGGCgGUCC-CGGGcacggaaaCUGCGGCCGGu -3'
miRNA:   3'- gGCUGgCAGGaGUCCc-------GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 33657 0.68 0.608564
Target:  5'- uUCGACCGUCCggcgCgcggggAGGGCCGCuGCg-- -3'
miRNA:   3'- -GGCUGGCAGGa---G------UCCCGGCGcCGgcc -5'
16018 3' -63.8 NC_004065.1 + 102027 0.68 0.62706
Target:  5'- gCGGCgGgccaCCUCGGugacccGCgGCGGCCGGg -3'
miRNA:   3'- gGCUGgCa---GGAGUCc-----CGgCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 109910 0.68 0.599335
Target:  5'- cCCGGCuCGUCC-----GCCGCGGCCGc -3'
miRNA:   3'- -GGCUG-GCAGGaguccCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 117398 0.68 0.608564
Target:  5'- cUCGGCCG-CgCgcgCuGGGCuCGCGGCgCGGa -3'
miRNA:   3'- -GGCUGGCaG-Ga--GuCCCG-GCGCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 182415 0.68 0.62706
Target:  5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3'
miRNA:   3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 200842 0.68 0.633539
Target:  5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3'
miRNA:   3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 186875 0.68 0.636316
Target:  5'- cCCG-CCGUCCgugcgCGuGucuuCCGCGGCCGGc -3'
miRNA:   3'- -GGCuGGCAGGa----GUcCc---GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120434 0.68 0.580024
Target:  5'- uCCGACC-UCgUCcGGGCCcucuugcugucggGCGGCgGGa -3'
miRNA:   3'- -GGCUGGcAGgAGuCCCGG-------------CGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 165837 0.69 0.553587
Target:  5'- -aGACCGUCaCU-AGGGacggCGgGGCCGGa -3'
miRNA:   3'- ggCUGGCAG-GAgUCCCg---GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 21964 0.69 0.553587
Target:  5'- -gGGCCGUCgUCggcaggacggugAGGGCCGCcacGGCCa- -3'
miRNA:   3'- ggCUGGCAGgAG------------UCCCGGCG---CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 123749 0.69 0.544551
Target:  5'- uCCGGuCCagcaCCUCGGuGcGCCGCGcGCCGGu -3'
miRNA:   3'- -GGCU-GGca--GGAGUC-C-CGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 68724 0.69 0.553587
Target:  5'- aCCacaACCGcaUCCUgaCGGGGUCGCuGCCGGa -3'
miRNA:   3'- -GGc--UGGC--AGGA--GUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 56898 0.69 0.562667
Target:  5'- gCGugCGgaugaUCCUC--GGCUGCGGUCGGa -3'
miRNA:   3'- gGCugGC-----AGGAGucCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 152035 0.69 0.552681
Target:  5'- uCCu-CCGUCC-CGGGgcggcucGCCGCGGCCa- -3'
miRNA:   3'- -GGcuGGCAGGaGUCC-------CGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 114816 0.69 0.535564
Target:  5'- cCCGGCgGUaugccCCgucgCGGcGGCCaCGGCCGGa -3'
miRNA:   3'- -GGCUGgCA-----GGa---GUC-CCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163097 0.69 0.526629
Target:  5'- gCCGcACCGagaaCUgGGGGCC-CGGCUGGc -3'
miRNA:   3'- -GGC-UGGCag--GAgUCCCGGcGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.