miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 64363 1.11 0.000881
Target:  5'- aCCGACCGUCCUCAGGGCCGCGGCCGGa -3'
miRNA:   3'- -GGCUGGCAGGAGUCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 207975 0.86 0.052388
Target:  5'- aCCGACCGgagggauaccgcggCCUgccCGGGGCCGUGGCCGGg -3'
miRNA:   3'- -GGCUGGCa-------------GGA---GUCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 138434 0.8 0.120596
Target:  5'- gCCGugCGUCCUCgaGGGGUCGgGGCgGGc -3'
miRNA:   3'- -GGCugGCAGGAG--UCCCGGCgCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 101966 0.78 0.164761
Target:  5'- uCCGAauauaUCGUCCUCAGGGCCGacgaggacgucgauaUGGCCGa -3'
miRNA:   3'- -GGCU-----GGCAGGAGUCCCGGC---------------GCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 31133 0.77 0.187207
Target:  5'- aCCGucuCCGUCuccgaCUCGGGcaucgacaccGCCGCGGCCGGa -3'
miRNA:   3'- -GGCu--GGCAG-----GAGUCC----------CGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 94617 0.76 0.219013
Target:  5'- uCCGAUCGgcUCCUgaCGGGGUcgggCGCGGCCGGc -3'
miRNA:   3'- -GGCUGGC--AGGA--GUCCCG----GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 77124 0.76 0.223916
Target:  5'- gCCGACauCGUCagaCGGGGCUGCGGuuGGg -3'
miRNA:   3'- -GGCUG--GCAGga-GUCCCGGCGCCggCC- -5'
16018 3' -63.8 NC_004065.1 + 20472 0.75 0.266565
Target:  5'- gCCGGCCGggccUCCuUCAGucCCGCGGUCGGg -3'
miRNA:   3'- -GGCUGGC----AGG-AGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 60767 0.74 0.309073
Target:  5'- -aGGCCG-Ca-CAGGGCCGCGGCCu- -3'
miRNA:   3'- ggCUGGCaGgaGUCCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 129548 0.74 0.302697
Target:  5'- aCGAgCCGUCCgaucGGGCCGauGCCGGu -3'
miRNA:   3'- gGCU-GGCAGGagu-CCCGGCgcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 198992 0.74 0.290249
Target:  5'- cCUGGCgcUCggCAGGGCCGCGGCCGa -3'
miRNA:   3'- -GGCUGgcAGgaGUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 116138 0.72 0.40894
Target:  5'- gUCGG-CGUCCUgCGGcGGCuCGgGGCCGGg -3'
miRNA:   3'- -GGCUgGCAGGA-GUC-CCG-GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 169102 0.72 0.392726
Target:  5'- uUGGCCacGUCCUgAcagacgcGGGCCGCGGCCa- -3'
miRNA:   3'- gGCUGG--CAGGAgU-------CCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 126420 0.72 0.378421
Target:  5'- aCGACUGUUCgagCGGGGCCGCauccucGGuCUGGg -3'
miRNA:   3'- gGCUGGCAGGa--GUCCCGGCG------CC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 205526 0.72 0.393489
Target:  5'- -gGGCCGgCgCUCAGGGCCGgCGGCgGu -3'
miRNA:   3'- ggCUGGCaG-GAGUCCCGGC-GCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 146592 0.72 0.401167
Target:  5'- -gGAUCGggguggCCaUCGGGGCCGuCGGCgGGg -3'
miRNA:   3'- ggCUGGCa-----GG-AGUCCCGGC-GCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 156879 0.71 0.440948
Target:  5'- -gGACCGaaUCCU-GGGGUCGCGcGUCGGg -3'
miRNA:   3'- ggCUGGC--AGGAgUCCCGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32495 0.71 0.465864
Target:  5'- aCGAUCGUCCccuUCuaccGCgCGCGGCCGGg -3'
miRNA:   3'- gGCUGGCAGG---AGucc-CG-GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 26946 0.71 0.416806
Target:  5'- -gGACCG-CUcCGGcGGCCGCGGCgGGc -3'
miRNA:   3'- ggCUGGCaGGaGUC-CCGGCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 65395 0.71 0.457476
Target:  5'- cCCGACUGuUCCUCcGaGGCUGCGaGCCu- -3'
miRNA:   3'- -GGCUGGC-AGGAGuC-CCGGCGC-CGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.