miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 89172 0.68 0.590126
Target:  5'- gCGGCgGcCUUCAGGGCCGUcuucuuGUCGGa -3'
miRNA:   3'- gGCUGgCaGGAGUCCCGGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 26873 0.68 0.590126
Target:  5'- -aGACgGUCCUC-GGGUCGCgaGGgCGGc -3'
miRNA:   3'- ggCUGgCAGGAGuCCCGGCG--CCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 209135 0.68 0.599335
Target:  5'- gCGAgCGgauUCCcCAGcGCCGCGGCCGu -3'
miRNA:   3'- gGCUgGC---AGGaGUCcCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 109910 0.68 0.599335
Target:  5'- cCCGGCuCGUCC-----GCCGCGGCCGc -3'
miRNA:   3'- -GGCUG-GCAGGaguccCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 8262 0.68 0.60487
Target:  5'- gCGGCCGugaccuuUCUgcucaucggacugaUCGGGGCCGCGGUguuagCGGu -3'
miRNA:   3'- gGCUGGC-------AGG--------------AGUCCCGGCGCCG-----GCC- -5'
16018 3' -63.8 NC_004065.1 + 117398 0.68 0.608564
Target:  5'- cUCGGCCG-CgCgcgCuGGGCuCGCGGCgCGGa -3'
miRNA:   3'- -GGCUGGCaG-Ga--GuCCCG-GCGCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 33657 0.68 0.608564
Target:  5'- uUCGACCGUCCggcgCgcggggAGGGCCGCuGCg-- -3'
miRNA:   3'- -GGCUGGCAGGa---G------UCCCGGCGcCGgcc -5'
16018 3' -63.8 NC_004065.1 + 102532 0.68 0.617808
Target:  5'- aCGACgcgcgccuUGUCCUCGucgguGGcGCCGgGGUCGGg -3'
miRNA:   3'- gGCUG--------GCAGGAGU-----CC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 182415 0.68 0.62706
Target:  5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3'
miRNA:   3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 102027 0.68 0.62706
Target:  5'- gCGGCgGgccaCCUCGGugacccGCgGCGGCCGGg -3'
miRNA:   3'- gGCUGgCa---GGAGUCc-----CGgCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 209546 0.68 0.62706
Target:  5'- cCCGACCGcgggaCUgaaGGaGGCC-CGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGag-UC-CCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 200842 0.68 0.633539
Target:  5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3'
miRNA:   3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 186875 0.68 0.636316
Target:  5'- cCCG-CCGUCCgugcgCGuGucuuCCGCGGCCGGc -3'
miRNA:   3'- -GGCuGGCAGGa----GUcCc---GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 115785 0.68 0.636316
Target:  5'- uUGGCgGUCC-CGGGcacggaaaCUGCGGCCGGu -3'
miRNA:   3'- gGCUGgCAGGaGUCCc-------GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 78625 0.67 0.642794
Target:  5'- cCCGACCGacccgCCUCcGccacccaagagaucGGCCGCcagcgcagcGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGAGuC--------------CCGGCG---------CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 116810 0.67 0.645569
Target:  5'- uUGGCCGguaCCgacCGGGGCagCGUGGCCGu -3'
miRNA:   3'- gGCUGGCa--GGa--GUCCCG--GCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 199652 0.67 0.645569
Target:  5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3'
miRNA:   3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 113285 0.67 0.65389
Target:  5'- gCgGAUCGUCUUCAccaugacGGGCgacgccgcuCGCGcGCCGGa -3'
miRNA:   3'- -GgCUGGCAGGAGU-------CCCG---------GCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 223860 0.67 0.654813
Target:  5'- cUCGGCCGcCCggCccGGCCaucuCGGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGa-GucCCGGc---GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 83280 0.67 0.654813
Target:  5'- cUCGACCGgCCUC---GCgGCGGCCGa -3'
miRNA:   3'- -GGCUGGCaGGAGuccCGgCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.