miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 80300 0.66 0.699777
Target:  5'- -gGACCGcuaugagUCCg-AGGGCCggcGCGGCCGcGg -3'
miRNA:   3'- ggCUGGC-------AGGagUCCCGG---CGCCGGC-C- -5'
16018 3' -63.8 NC_004065.1 + 110302 0.67 0.69158
Target:  5'- cCCGGCCGUCacgguCUCGcaGCUcUGGCCGGg -3'
miRNA:   3'- -GGCUGGCAG-----GAGUccCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 60082 0.67 0.69158
Target:  5'- gCCGcGCuCGUCgUCgucgaagaggucGGGGUagaaGCGGCCGGc -3'
miRNA:   3'- -GGC-UG-GCAGgAG------------UCCCGg---CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 59691 0.67 0.69158
Target:  5'- uCCGAgUCGUCgUagaAGGGCgccgaGCGGCCGcGg -3'
miRNA:   3'- -GGCU-GGCAGgAg--UCCCGg----CGCCGGC-C- -5'
16018 3' -63.8 NC_004065.1 + 36108 0.67 0.69158
Target:  5'- gUGGCgG-CaaCGGGGCCGCuGCCGGc -3'
miRNA:   3'- gGCUGgCaGgaGUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 130475 0.67 0.69158
Target:  5'- aCGGCCGUCC-----GCCGCGGCgagaCGGg -3'
miRNA:   3'- gGCUGGCAGGaguccCGGCGCCG----GCC- -5'
16018 3' -63.8 NC_004065.1 + 165625 0.67 0.69158
Target:  5'- cUCGACCGUCUUUAGGuCgGC-GUCGGu -3'
miRNA:   3'- -GGCUGGCAGGAGUCCcGgCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 53839 0.67 0.682432
Target:  5'- gCGACCGUgCCaacucuucgCGGcGGUCGCG-CCGGg -3'
miRNA:   3'- gGCUGGCA-GGa--------GUC-CCGGCGCcGGCC- -5'
16018 3' -63.8 NC_004065.1 + 31074 0.67 0.682432
Target:  5'- aCG-CCuUCCUCAuGGCgGCGGCCu- -3'
miRNA:   3'- gGCuGGcAGGAGUcCCGgCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 5 0.67 0.682432
Target:  5'- cCCGGCCGUCUg-AGuGCgCGCGGgcccCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCcCG-GCGCC----GGCC- -5'
16018 3' -63.8 NC_004065.1 + 18084 0.67 0.682432
Target:  5'- gCGACCG-CCgCAGccUCGUGGCCGGc -3'
miRNA:   3'- gGCUGGCaGGaGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 41357 0.67 0.682432
Target:  5'- aCGACCGUCgUCucccGCCGCGcGCCc- -3'
miRNA:   3'- gGCUGGCAGgAGucc-CGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 129430 0.67 0.682432
Target:  5'- gCUGugCG-CCUCGGaccgguacGuGCCGCGGgCGGa -3'
miRNA:   3'- -GGCugGCaGGAGUC--------C-CGGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 211144 0.67 0.682432
Target:  5'- uCUGGCCGUUCggGGGGgaGCGggcguGCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCCCggCGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 189105 0.67 0.682432
Target:  5'- cCCGGugucuCUGUgCUCAGGGCC-CGgacaaGCCGGc -3'
miRNA:   3'- -GGCU-----GGCAgGAGUCCCGGcGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 205738 0.67 0.673252
Target:  5'- cCCaucauCUGUCg-CGGGGCCGCGaGCCGu -3'
miRNA:   3'- -GGcu---GGCAGgaGUCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 136468 0.67 0.673252
Target:  5'- gCCGAgCCGgaaagCCg-GGGaGCCGaGGCCGGu -3'
miRNA:   3'- -GGCU-GGCa----GGagUCC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 470 0.67 0.673251
Target:  5'- cUCGcCUGagucagCCUCcGGGCCGCGcGCCGc -3'
miRNA:   3'- -GGCuGGCa-----GGAGuCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 110177 0.67 0.673251
Target:  5'- cCCGACC-UCUgCGGcGGCCGCGacgcGCCGc -3'
miRNA:   3'- -GGCUGGcAGGaGUC-CCGGCGC----CGGCc -5'
16018 3' -63.8 NC_004065.1 + 35396 0.67 0.672332
Target:  5'- -gGACCGUCaUCGGcGCCGUGGgagaguaCCGGg -3'
miRNA:   3'- ggCUGGCAGgAGUCcCGGCGCC-------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.