Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16018 | 3' | -63.8 | NC_004065.1 | + | 60894 | 0.67 | 0.664043 |
Target: 5'- gCGAgCGU-CUCGGgaacugcuGGCCGCGGCCc- -3' miRNA: 3'- gGCUgGCAgGAGUC--------CCGGCGCCGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 208034 | 0.67 | 0.664043 |
Target: 5'- aUGACCGUCggCGuGGCCGUGGCgGc -3' miRNA: 3'- gGCUGGCAGgaGUcCCGGCGCCGgCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 6158 | 0.67 | 0.664043 |
Target: 5'- uCCGGCCGagauggCC---GGGCCggGCGGCCGa -3' miRNA: 3'- -GGCUGGCa-----GGaguCCCGG--CGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 110127 | 0.67 | 0.654813 |
Target: 5'- -aGAgCGUCUUCuccGGCCGCG-CCGGc -3' miRNA: 3'- ggCUgGCAGGAGuc-CCGGCGCcGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 26892 | 0.67 | 0.654813 |
Target: 5'- gCCGGCCGgUC-CAGaGGCCGCucgaccgcacGCCGGa -3' miRNA: 3'- -GGCUGGCaGGaGUC-CCGGCGc---------CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 83280 | 0.67 | 0.654813 |
Target: 5'- cUCGACCGgCCUC---GCgGCGGCCGa -3' miRNA: 3'- -GGCUGGCaGGAGuccCGgCGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 223860 | 0.67 | 0.654813 |
Target: 5'- cUCGGCCGcCCggCccGGCCaucuCGGCCGGa -3' miRNA: 3'- -GGCUGGCaGGa-GucCCGGc---GCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 59753 | 0.67 | 0.654813 |
Target: 5'- gCCGACCGcguggCCgauggUGGcGGCgGCGGCCa- -3' miRNA: 3'- -GGCUGGCa----GGa----GUC-CCGgCGCCGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 113285 | 0.67 | 0.65389 |
Target: 5'- gCgGAUCGUCUUCAccaugacGGGCgacgccgcuCGCGcGCCGGa -3' miRNA: 3'- -GgCUGGCAGGAGU-------CCCG---------GCGC-CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 199652 | 0.67 | 0.645569 |
Target: 5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3' miRNA: 3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 116810 | 0.67 | 0.645569 |
Target: 5'- uUGGCCGguaCCgacCGGGGCagCGUGGCCGu -3' miRNA: 3'- gGCUGGCa--GGa--GUCCCG--GCGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 78625 | 0.67 | 0.642794 |
Target: 5'- cCCGACCGacccgCCUCcGccacccaagagaucGGCCGCcagcgcagcGGCCGGc -3' miRNA: 3'- -GGCUGGCa----GGAGuC--------------CCGGCG---------CCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 115785 | 0.68 | 0.636316 |
Target: 5'- uUGGCgGUCC-CGGGcacggaaaCUGCGGCCGGu -3' miRNA: 3'- gGCUGgCAGGaGUCCc-------GGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 186875 | 0.68 | 0.636316 |
Target: 5'- cCCG-CCGUCCgugcgCGuGucuuCCGCGGCCGGc -3' miRNA: 3'- -GGCuGGCAGGa----GUcCc---GGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 200842 | 0.68 | 0.633539 |
Target: 5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3' miRNA: 3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 102027 | 0.68 | 0.62706 |
Target: 5'- gCGGCgGgccaCCUCGGugacccGCgGCGGCCGGg -3' miRNA: 3'- gGCUGgCa---GGAGUCc-----CGgCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 209546 | 0.68 | 0.62706 |
Target: 5'- cCCGACCGcgggaCUgaaGGaGGCC-CGGCCGGc -3' miRNA: 3'- -GGCUGGCa----GGag-UC-CCGGcGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 182415 | 0.68 | 0.62706 |
Target: 5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3' miRNA: 3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 102532 | 0.68 | 0.617808 |
Target: 5'- aCGACgcgcgccuUGUCCUCGucgguGGcGCCGgGGUCGGg -3' miRNA: 3'- gGCUG--------GCAGGAGU-----CC-CGGCgCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 117398 | 0.68 | 0.608564 |
Target: 5'- cUCGGCCG-CgCgcgCuGGGCuCGCGGCgCGGa -3' miRNA: 3'- -GGCUGGCaG-Ga--GuCCCG-GCGCCG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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