miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 33657 0.68 0.608564
Target:  5'- uUCGACCGUCCggcgCgcggggAGGGCCGCuGCg-- -3'
miRNA:   3'- -GGCUGGCAGGa---G------UCCCGGCGcCGgcc -5'
16018 3' -63.8 NC_004065.1 + 8262 0.68 0.60487
Target:  5'- gCGGCCGugaccuuUCUgcucaucggacugaUCGGGGCCGCGGUguuagCGGu -3'
miRNA:   3'- gGCUGGC-------AGG--------------AGUCCCGGCGCCG-----GCC- -5'
16018 3' -63.8 NC_004065.1 + 109910 0.68 0.599335
Target:  5'- cCCGGCuCGUCC-----GCCGCGGCCGc -3'
miRNA:   3'- -GGCUG-GCAGGaguccCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 209135 0.68 0.599335
Target:  5'- gCGAgCGgauUCCcCAGcGCCGCGGCCGu -3'
miRNA:   3'- gGCUgGC---AGGaGUCcCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 27199 0.68 0.590126
Target:  5'- gCGAgCGUCauggCGGcGGUCGUGGUCGGc -3'
miRNA:   3'- gGCUgGCAGga--GUC-CCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 89172 0.68 0.590126
Target:  5'- gCGGCgGcCUUCAGGGCCGUcuucuuGUCGGa -3'
miRNA:   3'- gGCUGgCaGGAGUCCCGGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 26873 0.68 0.590126
Target:  5'- -aGACgGUCCUC-GGGUCGCgaGGgCGGc -3'
miRNA:   3'- ggCUGgCAGGAGuCCCGGCG--CCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 188651 0.68 0.580941
Target:  5'- aCGA-UGUCCgcUCgAGGGCgCGCGGCgGGa -3'
miRNA:   3'- gGCUgGCAGG--AG-UCCCG-GCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 151498 0.68 0.580941
Target:  5'- gCgGACgGgcUCCUCAGcgguguucugaGGCCGCugccGGCCGGg -3'
miRNA:   3'- -GgCUGgC--AGGAGUC-----------CCGGCG----CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20347 0.68 0.580941
Target:  5'- gCCGGuccUCGUUCUUAcGGcGUCGaCGGCCGGg -3'
miRNA:   3'- -GGCU---GGCAGGAGU-CC-CGGC-GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120434 0.68 0.580024
Target:  5'- uCCGACC-UCgUCcGGGCCcucuugcugucggGCGGCgGGa -3'
miRNA:   3'- -GGCUGGcAGgAGuCCCGG-------------CGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 56898 0.69 0.562667
Target:  5'- gCGugCGgaugaUCCUC--GGCUGCGGUCGGa -3'
miRNA:   3'- gGCugGC-----AGGAGucCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 68724 0.69 0.553587
Target:  5'- aCCacaACCGcaUCCUgaCGGGGUCGCuGCCGGa -3'
miRNA:   3'- -GGc--UGGC--AGGA--GUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 165837 0.69 0.553587
Target:  5'- -aGACCGUCaCU-AGGGacggCGgGGCCGGa -3'
miRNA:   3'- ggCUGGCAG-GAgUCCCg---GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 21964 0.69 0.553587
Target:  5'- -gGGCCGUCgUCggcaggacggugAGGGCCGCcacGGCCa- -3'
miRNA:   3'- ggCUGGCAGgAG------------UCCCGGCG---CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 152035 0.69 0.552681
Target:  5'- uCCu-CCGUCC-CGGGgcggcucGCCGCGGCCa- -3'
miRNA:   3'- -GGcuGGCAGGaGUCC-------CGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 123749 0.69 0.544551
Target:  5'- uCCGGuCCagcaCCUCGGuGcGCCGCGcGCCGGu -3'
miRNA:   3'- -GGCU-GGca--GGAGUC-C-CGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 114816 0.69 0.535564
Target:  5'- cCCGGCgGUaugccCCgucgCGGcGGCCaCGGCCGGa -3'
miRNA:   3'- -GGCUGgCA-----GGa---GUC-CCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163097 0.69 0.526629
Target:  5'- gCCGcACCGagaaCUgGGGGCC-CGGCUGGc -3'
miRNA:   3'- -GGC-UGGCag--GAgUCCCGGcGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.