miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 5 0.67 0.682432
Target:  5'- cCCGGCCGUCUg-AGuGCgCGCGGgcccCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCcCG-GCGCC----GGCC- -5'
16018 3' -63.8 NC_004065.1 + 470 0.67 0.673251
Target:  5'- cUCGcCUGagucagCCUCcGGGCCGCGcGCCGc -3'
miRNA:   3'- -GGCuGGCa-----GGAGuCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 6158 0.67 0.664043
Target:  5'- uCCGGCCGagauggCC---GGGCCggGCGGCCGa -3'
miRNA:   3'- -GGCUGGCa-----GGaguCCCGG--CGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 8262 0.68 0.60487
Target:  5'- gCGGCCGugaccuuUCUgcucaucggacugaUCGGGGCCGCGGUguuagCGGu -3'
miRNA:   3'- gGCUGGC-------AGG--------------AGUCCCGGCGCCG-----GCC- -5'
16018 3' -63.8 NC_004065.1 + 8744 0.66 0.709745
Target:  5'- aCGACCGgaggCCgUGGuGGCgGCGGCaGGg -3'
miRNA:   3'- gGCUGGCa---GGaGUC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 18084 0.67 0.682432
Target:  5'- gCGACCG-CCgCAGccUCGUGGCCGGc -3'
miRNA:   3'- gGCUGGCaGGaGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20347 0.68 0.580941
Target:  5'- gCCGGuccUCGUUCUUAcGGcGUCGaCGGCCGGg -3'
miRNA:   3'- -GGCU---GGCAGGAGU-CC-CGGC-GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20472 0.75 0.266565
Target:  5'- gCCGGCCGggccUCCuUCAGucCCGCGGUCGGg -3'
miRNA:   3'- -GGCUGGC----AGG-AGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 21316 0.66 0.700686
Target:  5'- aCGACCG-CCUCGGcGUgCGCGGCgGu -3'
miRNA:   3'- gGCUGGCaGGAGUCcCG-GCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 21964 0.69 0.553587
Target:  5'- -gGGCCGUCgUCggcaggacggugAGGGCCGCcacGGCCa- -3'
miRNA:   3'- ggCUGGCAGgAG------------UCCCGGCG---CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 26873 0.68 0.590126
Target:  5'- -aGACgGUCCUC-GGGUCGCgaGGgCGGc -3'
miRNA:   3'- ggCUGgCAGGAGuCCCGGCG--CCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 26892 0.67 0.654813
Target:  5'- gCCGGCCGgUC-CAGaGGCCGCucgaccgcacGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGaGUC-CCGGCGc---------CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 26946 0.71 0.416806
Target:  5'- -gGACCG-CUcCGGcGGCCGCGGCgGGc -3'
miRNA:   3'- ggCUGGCaGGaGUC-CCGGCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 27199 0.68 0.590126
Target:  5'- gCGAgCGUCauggCGGcGGUCGUGGUCGGc -3'
miRNA:   3'- gGCUgGCAGga--GUC-CCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 31074 0.67 0.682432
Target:  5'- aCG-CCuUCCUCAuGGCgGCGGCCu- -3'
miRNA:   3'- gGCuGGcAGGAGUcCCGgCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 31133 0.77 0.187207
Target:  5'- aCCGucuCCGUCuccgaCUCGGGcaucgacaccGCCGCGGCCGGa -3'
miRNA:   3'- -GGCu--GGCAG-----GAGUCC----------CGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32495 0.71 0.465864
Target:  5'- aCGAUCGUCCccuUCuaccGCgCGCGGCCGGg -3'
miRNA:   3'- gGCUGGCAGG---AGucc-CG-GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32809 0.65 0.751491
Target:  5'- gUCG-UCGUCCUCGuagccgucGGGCCGCucguccgagaagguGaGCCGGu -3'
miRNA:   3'- -GGCuGGCAGGAGU--------CCCGGCG--------------C-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32894 0.7 0.499306
Target:  5'- uCCGagauGCCGUCCUgucgGGGGUCGgaggcgacgaagaCGGCCGGu -3'
miRNA:   3'- -GGC----UGGCAGGAg---UCCCGGC-------------GCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.