miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 33657 0.68 0.608564
Target:  5'- uUCGACCGUCCggcgCgcggggAGGGCCGCuGCg-- -3'
miRNA:   3'- -GGCUGGCAGGa---G------UCCCGGCGcCGgcc -5'
16018 3' -63.8 NC_004065.1 + 34227 0.7 0.474331
Target:  5'- cCCGACCcUUCagcgCAGGGcCCGCGGuCCGc -3'
miRNA:   3'- -GGCUGGcAGGa---GUCCC-GGCGCC-GGCc -5'
16018 3' -63.8 NC_004065.1 + 35396 0.67 0.672332
Target:  5'- -gGACCGUCaUCGGcGCCGUGGgagaguaCCGGg -3'
miRNA:   3'- ggCUGGCAGgAGUCcCGGCGCC-------GGCC- -5'
16018 3' -63.8 NC_004065.1 + 36108 0.67 0.69158
Target:  5'- gUGGCgG-CaaCGGGGCCGCuGCCGGc -3'
miRNA:   3'- gGCUGgCaGgaGUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 38321 0.66 0.745377
Target:  5'- cCCGAUUcUCCcgCGGGGUgGUGgGCUGGg -3'
miRNA:   3'- -GGCUGGcAGGa-GUCCCGgCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 41357 0.67 0.682432
Target:  5'- aCGACCGUCgUCucccGCCGCGcGCCc- -3'
miRNA:   3'- gGCUGGCAGgAGucc-CGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 53839 0.67 0.682432
Target:  5'- gCGACCGUgCCaacucuucgCGGcGGUCGCG-CCGGg -3'
miRNA:   3'- gGCUGGCA-GGa--------GUC-CCGGCGCcGGCC- -5'
16018 3' -63.8 NC_004065.1 + 56898 0.69 0.562667
Target:  5'- gCGugCGgaugaUCCUC--GGCUGCGGUCGGa -3'
miRNA:   3'- gGCugGC-----AGGAGucCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 59126 0.66 0.736574
Target:  5'- cCUGACCGUCCUgcuGGUCuuGGCCGc -3'
miRNA:   3'- -GGCUGGCAGGAgucCCGGcgCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 59691 0.67 0.69158
Target:  5'- uCCGAgUCGUCgUagaAGGGCgccgaGCGGCCGcGg -3'
miRNA:   3'- -GGCU-GGCAGgAg--UCCCGg----CGCCGGC-C- -5'
16018 3' -63.8 NC_004065.1 + 59753 0.67 0.654813
Target:  5'- gCCGACCGcguggCCgauggUGGcGGCgGCGGCCa- -3'
miRNA:   3'- -GGCUGGCa----GGa----GUC-CCGgCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 60082 0.67 0.69158
Target:  5'- gCCGcGCuCGUCgUCgucgaagaggucGGGGUagaaGCGGCCGGc -3'
miRNA:   3'- -GGC-UG-GCAGgAG------------UCCCGg---CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 60767 0.74 0.309073
Target:  5'- -aGGCCG-Ca-CAGGGCCGCGGCCu- -3'
miRNA:   3'- ggCUGGCaGgaGUCCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 60894 0.67 0.664043
Target:  5'- gCGAgCGU-CUCGGgaacugcuGGCCGCGGCCc- -3'
miRNA:   3'- gGCUgGCAgGAGUC--------CCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 64363 1.11 0.000881
Target:  5'- aCCGACCGUCCUCAGGGCCGCGGCCGGa -3'
miRNA:   3'- -GGCUGGCAGGAGUCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 65395 0.71 0.457476
Target:  5'- cCCGACUGuUCCUCcGaGGCUGCGaGCCu- -3'
miRNA:   3'- -GGCUGGC-AGGAGuC-CCGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 66125 0.66 0.745377
Target:  5'- aCCGaggcGCUGgcgcgCuGGGCCGCGGaCCGGc -3'
miRNA:   3'- -GGC----UGGCagga-GuCCCGGCGCC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 68724 0.69 0.553587
Target:  5'- aCCacaACCGcaUCCUgaCGGGGUCGCuGCCGGa -3'
miRNA:   3'- -GGc--UGGC--AGGA--GUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 77124 0.76 0.223916
Target:  5'- gCCGACauCGUCagaCGGGGCUGCGGuuGGg -3'
miRNA:   3'- -GGCUG--GCAGga-GUCCCGGCGCCggCC- -5'
16018 3' -63.8 NC_004065.1 + 78625 0.67 0.642794
Target:  5'- cCCGACCGacccgCCUCcGccacccaagagaucGGCCGCcagcgcagcGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGAGuC--------------CCGGCG---------CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.