miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 119242 0.66 0.736574
Target:  5'- aCUGugCGcUCCgaaacGGGCCGCGcGCCu- -3'
miRNA:   3'- -GGCugGC-AGGagu--CCCGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 120434 0.68 0.580024
Target:  5'- uCCGACC-UCgUCcGGGCCcucuugcugucggGCGGCgGGa -3'
miRNA:   3'- -GGCUGGcAGgAGuCCCGG-------------CGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 120574 0.66 0.709745
Target:  5'- gCGGgCGggaCCUCcGGcGCCGgucuCGGCCGGg -3'
miRNA:   3'- gGCUgGCa--GGAGuCC-CGGC----GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 122855 0.66 0.718751
Target:  5'- cUCGACCGcCCUCuGGcGGCagaGCGaGuuGGa -3'
miRNA:   3'- -GGCUGGCaGGAG-UC-CCGg--CGC-CggCC- -5'
16018 3' -63.8 NC_004065.1 + 123749 0.69 0.544551
Target:  5'- uCCGGuCCagcaCCUCGGuGcGCCGCGcGCCGGu -3'
miRNA:   3'- -GGCU-GGca--GGAGUC-C-CGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 126420 0.72 0.378421
Target:  5'- aCGACUGUUCgagCGGGGCCGCauccucGGuCUGGg -3'
miRNA:   3'- gGCUGGCAGGa--GUCCCGGCG------CC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 128711 0.66 0.709745
Target:  5'- uUCGGCUccgCUUCAGGGagagGCGGCUGGc -3'
miRNA:   3'- -GGCUGGca-GGAGUCCCgg--CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 129430 0.67 0.682432
Target:  5'- gCUGugCG-CCUCGGaccgguacGuGCCGCGGgCGGa -3'
miRNA:   3'- -GGCugGCaGGAGUC--------C-CGGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 129548 0.74 0.302697
Target:  5'- aCGAgCCGUCCgaucGGGCCGauGCCGGu -3'
miRNA:   3'- gGCU-GGCAGGagu-CCCGGCgcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 130475 0.67 0.69158
Target:  5'- aCGGCCGUCC-----GCCGCGGCgagaCGGg -3'
miRNA:   3'- gGCUGGCAGGaguccCGGCGCCG----GCC- -5'
16018 3' -63.8 NC_004065.1 + 135324 0.66 0.718751
Target:  5'- cUCGAgCCGcCCUCcaaggucaGGGGCCGCgagaucaaGGCCa- -3'
miRNA:   3'- -GGCU-GGCaGGAG--------UCCCGGCG--------CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 136468 0.67 0.673252
Target:  5'- gCCGAgCCGgaaagCCg-GGGaGCCGaGGCCGGu -3'
miRNA:   3'- -GGCU-GGCa----GGagUCC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 138434 0.8 0.120596
Target:  5'- gCCGugCGUCCUCgaGGGGUCGgGGCgGGc -3'
miRNA:   3'- -GGCugGCAGGAG--UCCCGGCgCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 146592 0.72 0.401167
Target:  5'- -gGAUCGggguggCCaUCGGGGCCGuCGGCgGGg -3'
miRNA:   3'- ggCUGGCa-----GG-AGUCCCGGC-GCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 148852 0.66 0.718751
Target:  5'- gCGGCCG-CCgcgaucgaGGaGGCgGCGGCgGGg -3'
miRNA:   3'- gGCUGGCaGGag------UC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 149699 0.7 0.474331
Target:  5'- gUGAaCG-CCggGGGGCCGCGGCCGc -3'
miRNA:   3'- gGCUgGCaGGagUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 151387 0.66 0.736574
Target:  5'- gCGGCCGaUCUCuuGGGUgGCGGaggCGGg -3'
miRNA:   3'- gGCUGGCaGGAGu-CCCGgCGCCg--GCC- -5'
16018 3' -63.8 NC_004065.1 + 151498 0.68 0.580941
Target:  5'- gCgGACgGgcUCCUCAGcgguguucugaGGCCGCugccGGCCGGg -3'
miRNA:   3'- -GgCUGgC--AGGAGUC-----------CCGGCG----CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 152035 0.69 0.552681
Target:  5'- uCCu-CCGUCC-CGGGgcggcucGCCGCGGCCa- -3'
miRNA:   3'- -GGcuGGCAGGaGUCC-------CGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 156879 0.71 0.440948
Target:  5'- -gGACCGaaUCCU-GGGGUCGCGcGUCGGg -3'
miRNA:   3'- ggCUGGC--AGGAgUCCCGGCGC-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.