miRNA display CGI


Results 81 - 100 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 159148 0.66 0.709745
Target:  5'- gCGAgUUGUCCagCAGGGUCGCcaGCUGGg -3'
miRNA:   3'- gGCU-GGCAGGa-GUCCCGGCGc-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163097 0.69 0.526629
Target:  5'- gCCGcACCGagaaCUgGGGGCC-CGGCUGGc -3'
miRNA:   3'- -GGC-UGGCag--GAgUCCCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163271 0.66 0.731256
Target:  5'- -aGACCGUCUcuUCggucgcgacgccgccGGGGuCCGaCGGCaCGGg -3'
miRNA:   3'- ggCUGGCAGG--AG---------------UCCC-GGC-GCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 165625 0.67 0.69158
Target:  5'- cUCGACCGUCUUUAGGuCgGC-GUCGGu -3'
miRNA:   3'- -GGCUGGCAGGAGUCCcGgCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 165837 0.69 0.553587
Target:  5'- -aGACCGUCaCU-AGGGacggCGgGGCCGGa -3'
miRNA:   3'- ggCUGGCAG-GAgUCCCg---GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 169102 0.72 0.392726
Target:  5'- uUGGCCacGUCCUgAcagacgcGGGCCGCGGCCa- -3'
miRNA:   3'- gGCUGG--CAGGAgU-------CCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 173378 0.7 0.508932
Target:  5'- aCCGACgGUgaa-GGGuGCCGCGGCCGc -3'
miRNA:   3'- -GGCUGgCAggagUCC-CGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 182415 0.68 0.62706
Target:  5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3'
miRNA:   3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 186875 0.68 0.636316
Target:  5'- cCCG-CCGUCCgugcgCGuGucuuCCGCGGCCGGc -3'
miRNA:   3'- -GGCuGGCAGGa----GUcCc---GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 188651 0.68 0.580941
Target:  5'- aCGA-UGUCCgcUCgAGGGCgCGCGGCgGGa -3'
miRNA:   3'- gGCUgGCAGG--AG-UCCCG-GCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 189105 0.67 0.682432
Target:  5'- cCCGGugucuCUGUgCUCAGGGCC-CGgacaaGCCGGc -3'
miRNA:   3'- -GGCU-----GGCAgGAGUCCCGGcGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 189193 0.66 0.745377
Target:  5'- cCUGAUgGacaaCgUCAGGGaCGCGGCCGa -3'
miRNA:   3'- -GGCUGgCa---GgAGUCCCgGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 198992 0.74 0.290249
Target:  5'- cCUGGCgcUCggCAGGGCCGCGGCCGa -3'
miRNA:   3'- -GGCUGgcAGgaGUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 199652 0.67 0.645569
Target:  5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3'
miRNA:   3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 200842 0.68 0.633539
Target:  5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3'
miRNA:   3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 205526 0.72 0.393489
Target:  5'- -gGGCCGgCgCUCAGGGCCGgCGGCgGu -3'
miRNA:   3'- ggCUGGCaG-GAGUCCCGGC-GCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 205738 0.67 0.673252
Target:  5'- cCCaucauCUGUCg-CGGGGCCGCGaGCCGu -3'
miRNA:   3'- -GGcu---GGCAGgaGUCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 207975 0.86 0.052388
Target:  5'- aCCGACCGgagggauaccgcggCCUgccCGGGGCCGUGGCCGGg -3'
miRNA:   3'- -GGCUGGCa-------------GGA---GUCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 208034 0.67 0.664043
Target:  5'- aUGACCGUCggCGuGGCCGUGGCgGc -3'
miRNA:   3'- gGCUGGCAGgaGUcCCGGCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 209135 0.68 0.599335
Target:  5'- gCGAgCGgauUCCcCAGcGCCGCGGCCGu -3'
miRNA:   3'- gGCUgGC---AGGaGUCcCGGCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.