Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 3' | -63.8 | NC_004065.1 | + | 229344 | 0.66 | 0.745377 |
Target: 5'- cCCgGGCgGUCgCUCGaccagcgagcGGGUgcucgcuacgCGCGGCCGGa -3' miRNA: 3'- -GG-CUGgCAG-GAGU----------CCCG----------GCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 223860 | 0.67 | 0.654813 |
Target: 5'- cUCGGCCGcCCggCccGGCCaucuCGGCCGGa -3' miRNA: 3'- -GGCUGGCaGGa-GucCCGGc---GCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 212993 | 0.66 | 0.727696 |
Target: 5'- cCUGGUCGUaCUCAaGGUCGUGGUCGGg -3' miRNA: 3'- -GGCUGGCAgGAGUcCCGGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 211144 | 0.67 | 0.682432 |
Target: 5'- uCUGGCCGUUCggGGGGgaGCGggcguGCCGGg -3' miRNA: 3'- -GGCUGGCAGGagUCCCggCGC-----CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 210704 | 0.7 | 0.508932 |
Target: 5'- gCGugCGUCCUCcGGGuaggaugacgcCCGUcGCCGGa -3' miRNA: 3'- gGCugGCAGGAGuCCC-----------GGCGcCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 209546 | 0.68 | 0.62706 |
Target: 5'- cCCGACCGcgggaCUgaaGGaGGCC-CGGCCGGc -3' miRNA: 3'- -GGCUGGCa----GGag-UC-CCGGcGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 209135 | 0.68 | 0.599335 |
Target: 5'- gCGAgCGgauUCCcCAGcGCCGCGGCCGu -3' miRNA: 3'- gGCUgGC---AGGaGUCcCGGCGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 208034 | 0.67 | 0.664043 |
Target: 5'- aUGACCGUCggCGuGGCCGUGGCgGc -3' miRNA: 3'- gGCUGGCAGgaGUcCCGGCGCCGgCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 207975 | 0.86 | 0.052388 |
Target: 5'- aCCGACCGgagggauaccgcggCCUgccCGGGGCCGUGGCCGGg -3' miRNA: 3'- -GGCUGGCa-------------GGA---GUCCCGGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 205738 | 0.67 | 0.673252 |
Target: 5'- cCCaucauCUGUCg-CGGGGCCGCGaGCCGu -3' miRNA: 3'- -GGcu---GGCAGgaGUCCCGGCGC-CGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 205526 | 0.72 | 0.393489 |
Target: 5'- -gGGCCGgCgCUCAGGGCCGgCGGCgGu -3' miRNA: 3'- ggCUGGCaG-GAGUCCCGGC-GCCGgCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 200842 | 0.68 | 0.633539 |
Target: 5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3' miRNA: 3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 199652 | 0.67 | 0.645569 |
Target: 5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3' miRNA: 3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 198992 | 0.74 | 0.290249 |
Target: 5'- cCUGGCgcUCggCAGGGCCGCGGCCGa -3' miRNA: 3'- -GGCUGgcAGgaGUCCCGGCGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 189193 | 0.66 | 0.745377 |
Target: 5'- cCUGAUgGacaaCgUCAGGGaCGCGGCCGa -3' miRNA: 3'- -GGCUGgCa---GgAGUCCCgGCGCCGGCc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 189105 | 0.67 | 0.682432 |
Target: 5'- cCCGGugucuCUGUgCUCAGGGCC-CGgacaaGCCGGc -3' miRNA: 3'- -GGCU-----GGCAgGAGUCCCGGcGC-----CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 188651 | 0.68 | 0.580941 |
Target: 5'- aCGA-UGUCCgcUCgAGGGCgCGCGGCgGGa -3' miRNA: 3'- gGCUgGCAGG--AG-UCCCG-GCGCCGgCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 186875 | 0.68 | 0.636316 |
Target: 5'- cCCG-CCGUCCgugcgCGuGucuuCCGCGGCCGGc -3' miRNA: 3'- -GGCuGGCAGGa----GUcCc---GGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 182415 | 0.68 | 0.62706 |
Target: 5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3' miRNA: 3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 173378 | 0.7 | 0.508932 |
Target: 5'- aCCGACgGUgaa-GGGuGCCGCGGCCGc -3' miRNA: 3'- -GGCUGgCAggagUCC-CGGCGCCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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