miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 117398 0.68 0.608564
Target:  5'- cUCGGCCG-CgCgcgCuGGGCuCGCGGCgCGGa -3'
miRNA:   3'- -GGCUGGCaG-Ga--GuCCCG-GCGCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 163097 0.69 0.526629
Target:  5'- gCCGcACCGagaaCUgGGGGCC-CGGCUGGc -3'
miRNA:   3'- -GGC-UGGCag--GAgUCCCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 123749 0.69 0.544551
Target:  5'- uCCGGuCCagcaCCUCGGuGcGCCGCGcGCCGGu -3'
miRNA:   3'- -GGCU-GGca--GGAGUC-C-CGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 21964 0.69 0.553587
Target:  5'- -gGGCCGUCgUCggcaggacggugAGGGCCGCcacGGCCa- -3'
miRNA:   3'- ggCUGGCAGgAG------------UCCCGGCG---CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 165837 0.69 0.553587
Target:  5'- -aGACCGUCaCU-AGGGacggCGgGGCCGGa -3'
miRNA:   3'- ggCUGGCAG-GAgUCCCg---GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 68724 0.69 0.553587
Target:  5'- aCCacaACCGcaUCCUgaCGGGGUCGCuGCCGGa -3'
miRNA:   3'- -GGc--UGGC--AGGA--GUCCCGGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 56898 0.69 0.562667
Target:  5'- gCGugCGgaugaUCCUC--GGCUGCGGUCGGa -3'
miRNA:   3'- gGCugGC-----AGGAGucCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120434 0.68 0.580024
Target:  5'- uCCGACC-UCgUCcGGGCCcucuugcugucggGCGGCgGGa -3'
miRNA:   3'- -GGCUGGcAGgAGuCCCGG-------------CGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 109910 0.68 0.599335
Target:  5'- cCCGGCuCGUCC-----GCCGCGGCCGc -3'
miRNA:   3'- -GGCUG-GCAGGaguccCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 32894 0.7 0.499306
Target:  5'- uCCGagauGCCGUCCUgucgGGGGUCGgaggcgacgaagaCGGCCGGu -3'
miRNA:   3'- -GGC----UGGCAGGAg---UCCCGGC-------------GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 149699 0.7 0.474331
Target:  5'- gUGAaCG-CCggGGGGCCGCGGCCGc -3'
miRNA:   3'- gGCUgGCaGGagUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 34227 0.7 0.474331
Target:  5'- cCCGACCcUUCagcgCAGGGcCCGCGGuCCGc -3'
miRNA:   3'- -GGCUGGcAGGa---GUCCC-GGCGCC-GGCc -5'
16018 3' -63.8 NC_004065.1 + 138434 0.8 0.120596
Target:  5'- gCCGugCGUCCUCgaGGGGUCGgGGCgGGc -3'
miRNA:   3'- -GGCugGCAGGAG--UCCCGGCgCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 101966 0.78 0.164761
Target:  5'- uCCGAauauaUCGUCCUCAGGGCCGacgaggacgucgauaUGGCCGa -3'
miRNA:   3'- -GGCU-----GGCAGGAGUCCCGGC---------------GCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 31133 0.77 0.187207
Target:  5'- aCCGucuCCGUCuccgaCUCGGGcaucgacaccGCCGCGGCCGGa -3'
miRNA:   3'- -GGCu--GGCAG-----GAGUCC----------CGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20472 0.75 0.266565
Target:  5'- gCCGGCCGggccUCCuUCAGucCCGCGGUCGGg -3'
miRNA:   3'- -GGCUGGC----AGG-AGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 60767 0.74 0.309073
Target:  5'- -aGGCCG-Ca-CAGGGCCGCGGCCu- -3'
miRNA:   3'- ggCUGGCaGgaGUCCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 169102 0.72 0.392726
Target:  5'- uUGGCCacGUCCUgAcagacgcGGGCCGCGGCCa- -3'
miRNA:   3'- gGCUGG--CAGGAgU-------CCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 116138 0.72 0.40894
Target:  5'- gUCGG-CGUCCUgCGGcGGCuCGgGGCCGGg -3'
miRNA:   3'- -GGCUgGCAGGA-GUC-CCG-GCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 26946 0.71 0.416806
Target:  5'- -gGACCG-CUcCGGcGGCCGCGGCgGGc -3'
miRNA:   3'- ggCUGGCaGGaGUC-CCGGCGCCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.