miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 207975 0.86 0.052388
Target:  5'- aCCGACCGgagggauaccgcggCCUgccCGGGGCCGUGGCCGGg -3'
miRNA:   3'- -GGCUGGCa-------------GGA---GUCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 151498 0.68 0.580941
Target:  5'- gCgGACgGgcUCCUCAGcgguguucugaGGCCGCugccGGCCGGg -3'
miRNA:   3'- -GgCUGgC--AGGAGUC-----------CCGGCG----CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20347 0.68 0.580941
Target:  5'- gCCGGuccUCGUUCUUAcGGcGUCGaCGGCCGGg -3'
miRNA:   3'- -GGCU---GGCAGGAGU-CC-CGGC-GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 189193 0.66 0.745377
Target:  5'- cCUGAUgGacaaCgUCAGGGaCGCGGCCGa -3'
miRNA:   3'- -GGCUGgCa---GgAGUCCCgGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 129548 0.74 0.302697
Target:  5'- aCGAgCCGUCCgaucGGGCCGauGCCGGu -3'
miRNA:   3'- gGCU-GGCAGGagu-CCCGGCgcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 126420 0.72 0.378421
Target:  5'- aCGACUGUUCgagCGGGGCCGCauccucGGuCUGGg -3'
miRNA:   3'- gGCUGGCAGGa--GUCCCGGCG------CC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 146592 0.72 0.401167
Target:  5'- -gGAUCGggguggCCaUCGGGGCCGuCGGCgGGg -3'
miRNA:   3'- ggCUGGCa-----GG-AGUCCCGGC-GCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 156879 0.71 0.440948
Target:  5'- -gGACCGaaUCCU-GGGGUCGCGcGUCGGg -3'
miRNA:   3'- ggCUGGC--AGGAgUCCCGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 173378 0.7 0.508932
Target:  5'- aCCGACgGUgaa-GGGuGCCGCGGCCGc -3'
miRNA:   3'- -GGCUGgCAggagUCC-CGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 152035 0.69 0.552681
Target:  5'- uCCu-CCGUCC-CGGGgcggcucGCCGCGGCCa- -3'
miRNA:   3'- -GGcuGGCAGGaGUCC-------CGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 115911 0.7 0.51775
Target:  5'- -gGGCCGUCgUC--GGCCuCGGCCGGc -3'
miRNA:   3'- ggCUGGCAGgAGucCCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32495 0.71 0.465864
Target:  5'- aCGAUCGUCCccuUCuaccGCgCGCGGCCGGg -3'
miRNA:   3'- gGCUGGCAGG---AGucc-CG-GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 94617 0.76 0.219013
Target:  5'- uCCGAUCGgcUCCUgaCGGGGUcgggCGCGGCCGGc -3'
miRNA:   3'- -GGCUGGC--AGGA--GUCCCG----GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 77124 0.76 0.223916
Target:  5'- gCCGACauCGUCagaCGGGGCUGCGGuuGGg -3'
miRNA:   3'- -GGCUG--GCAGga-GUCCCGGCGCCggCC- -5'
16018 3' -63.8 NC_004065.1 + 65395 0.71 0.457476
Target:  5'- cCCGACUGuUCCUCcGaGGCUGCGaGCCu- -3'
miRNA:   3'- -GGCUGGC-AGGAGuC-CCGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 114816 0.69 0.535564
Target:  5'- cCCGGCgGUaugccCCgucgCGGcGGCCaCGGCCGGa -3'
miRNA:   3'- -GGCUGgCA-----GGa---GUC-CCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 188651 0.68 0.580941
Target:  5'- aCGA-UGUCCgcUCgAGGGCgCGCGGCgGGa -3'
miRNA:   3'- gGCUgGCAGG--AG-UCCCG-GCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 198992 0.74 0.290249
Target:  5'- cCUGGCgcUCggCAGGGCCGCGGCCGa -3'
miRNA:   3'- -GGCUGgcAGgaGUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 205526 0.72 0.393489
Target:  5'- -gGGCCGgCgCUCAGGGCCGgCGGCgGu -3'
miRNA:   3'- ggCUGGCaG-GAGUCCCGGC-GCCGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.