miRNA display CGI


Results 21 - 40 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 27199 0.68 0.590126
Target:  5'- gCGAgCGUCauggCGGcGGUCGUGGUCGGc -3'
miRNA:   3'- gGCUgGCAGga--GUC-CCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 20347 0.68 0.580941
Target:  5'- gCCGGuccUCGUUCUUAcGGcGUCGaCGGCCGGg -3'
miRNA:   3'- -GGCU---GGCAGGAGU-CC-CGGC-GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 32495 0.71 0.465864
Target:  5'- aCGAUCGUCCccuUCuaccGCgCGCGGCCGGg -3'
miRNA:   3'- gGCUGGCAGG---AGucc-CG-GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 198992 0.74 0.290249
Target:  5'- cCUGGCgcUCggCAGGGCCGCGGCCGa -3'
miRNA:   3'- -GGCUGgcAGgaGUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 60894 0.67 0.664043
Target:  5'- gCGAgCGU-CUCGGgaacugcuGGCCGCGGCCc- -3'
miRNA:   3'- gGCUgGCAgGAGUC--------CCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 102027 0.68 0.62706
Target:  5'- gCGGCgGgccaCCUCGGugacccGCgGCGGCCGGg -3'
miRNA:   3'- gGCUGgCa---GGAGUCc-----CGgCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 151498 0.68 0.580941
Target:  5'- gCgGACgGgcUCCUCAGcgguguucugaGGCCGCugccGGCCGGg -3'
miRNA:   3'- -GgCUGgC--AGGAGUC-----------CCGGCG----CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 77124 0.76 0.223916
Target:  5'- gCCGACauCGUCagaCGGGGCUGCGGuuGGg -3'
miRNA:   3'- -GGCUG--GCAGga-GUCCCGGCGCCggCC- -5'
16018 3' -63.8 NC_004065.1 + 102532 0.68 0.617808
Target:  5'- aCGACgcgcgccuUGUCCUCGucgguGGcGCCGgGGUCGGg -3'
miRNA:   3'- gGCUG--------GCAGGAGU-----CC-CGGCgCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 94617 0.76 0.219013
Target:  5'- uCCGAUCGgcUCCUgaCGGGGUcgggCGCGGCCGGc -3'
miRNA:   3'- -GGCUGGC--AGGA--GUCCCG----GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 188651 0.68 0.580941
Target:  5'- aCGA-UGUCCgcUCgAGGGCgCGCGGCgGGa -3'
miRNA:   3'- gGCUgGCAGG--AG-UCCCG-GCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 209135 0.68 0.599335
Target:  5'- gCGAgCGgauUCCcCAGcGCCGCGGCCGu -3'
miRNA:   3'- gGCUgGC---AGGaGUCcCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 173378 0.7 0.508932
Target:  5'- aCCGACgGUgaa-GGGuGCCGCGGCCGc -3'
miRNA:   3'- -GGCUGgCAggagUCC-CGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 146592 0.72 0.401167
Target:  5'- -gGAUCGggguggCCaUCGGGGCCGuCGGCgGGg -3'
miRNA:   3'- ggCUGGCa-----GG-AGUCCCGGC-GCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 129548 0.74 0.302697
Target:  5'- aCGAgCCGUCCgaucGGGCCGauGCCGGu -3'
miRNA:   3'- gGCU-GGCAGGagu-CCCGGCgcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 205738 0.67 0.673252
Target:  5'- cCCaucauCUGUCg-CGGGGCCGCGaGCCGu -3'
miRNA:   3'- -GGcu---GGCAGgaGUCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 208034 0.67 0.664043
Target:  5'- aUGACCGUCggCGuGGCCGUGGCgGc -3'
miRNA:   3'- gGCUGGCAGgaGUcCCGGCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 199652 0.67 0.645569
Target:  5'- aCGGCCGUUUUCauuGGGGCCgaucacGCGGUCu- -3'
miRNA:   3'- gGCUGGCAGGAG---UCCCGG------CGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 209546 0.68 0.62706
Target:  5'- cCCGACCGcgggaCUgaaGGaGGCC-CGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGag-UC-CCGGcGCCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.