miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 210704 0.7 0.508932
Target:  5'- gCGugCGUCCUCcGGGuaggaugacgcCCGUcGCCGGa -3'
miRNA:   3'- gGCugGCAGGAGuCCC-----------GGCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 165625 0.67 0.69158
Target:  5'- cUCGACCGUCUUUAGGuCgGC-GUCGGu -3'
miRNA:   3'- -GGCUGGCAGGAGUCCcGgCGcCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 173378 0.7 0.508932
Target:  5'- aCCGACgGUgaa-GGGuGCCGCGGCCGc -3'
miRNA:   3'- -GGCUGgCAggagUCC-CGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 6494 0.69 0.526629
Target:  5'- aCCGcACgGUC----GGGUCGCGGCCGGc -3'
miRNA:   3'- -GGC-UGgCAGgaguCCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 151498 0.68 0.580941
Target:  5'- gCgGACgGgcUCCUCAGcgguguucugaGGCCGCugccGGCCGGg -3'
miRNA:   3'- -GgCUGgC--AGGAGUC-----------CCGGCG----CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 89172 0.68 0.590126
Target:  5'- gCGGCgGcCUUCAGGGCCGUcuucuuGUCGGa -3'
miRNA:   3'- gGCUGgCaGGAGUCCCGGCGc-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 148852 0.66 0.718751
Target:  5'- gCGGCCG-CCgcgaucgaGGaGGCgGCGGCgGGg -3'
miRNA:   3'- gGCUGGCaGGag------UC-CCGgCGCCGgCC- -5'
16018 3' -63.8 NC_004065.1 + 159148 0.66 0.709745
Target:  5'- gCGAgUUGUCCagCAGGGUCGCcaGCUGGg -3'
miRNA:   3'- gGCU-GGCAGGa-GUCCCGGCGc-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 38321 0.66 0.745377
Target:  5'- cCCGAUUcUCCcgCGGGGUgGUGgGCUGGg -3'
miRNA:   3'- -GGCUGGcAGGa-GUCCCGgCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 211144 0.67 0.682432
Target:  5'- uCUGGCCGUUCggGGGGgaGCGggcguGCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCCCggCGC-----CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 35396 0.67 0.672332
Target:  5'- -gGACCGUCaUCGGcGCCGUGGgagaguaCCGGg -3'
miRNA:   3'- ggCUGGCAGgAGUCcCGGCGCC-------GGCC- -5'
16018 3' -63.8 NC_004065.1 + 59753 0.67 0.654813
Target:  5'- gCCGACCGcguggCCgauggUGGcGGCgGCGGCCa- -3'
miRNA:   3'- -GGCUGGCa----GGa----GUC-CCGgCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 115785 0.68 0.636316
Target:  5'- uUGGCgGUCC-CGGGcacggaaaCUGCGGCCGGu -3'
miRNA:   3'- gGCUGgCAGGaGUCCc-------GGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 8262 0.68 0.60487
Target:  5'- gCGGCCGugaccuuUCUgcucaucggacugaUCGGGGCCGCGGUguuagCGGu -3'
miRNA:   3'- gGCUGGC-------AGG--------------AGUCCCGGCGCCG-----GCC- -5'
16018 3' -63.8 NC_004065.1 + 151387 0.66 0.736574
Target:  5'- gCGGCCGaUCUCuuGGGUgGCGGaggCGGg -3'
miRNA:   3'- gGCUGGCaGGAGu-CCCGgCGCCg--GCC- -5'
16018 3' -63.8 NC_004065.1 + 26892 0.67 0.654813
Target:  5'- gCCGGCCGgUC-CAGaGGCCGCucgaccgcacGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGaGUC-CCGGCGc---------CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 83280 0.67 0.654813
Target:  5'- cUCGACCGgCCUC---GCgGCGGCCGa -3'
miRNA:   3'- -GGCUGGCaGGAGuccCGgCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 470 0.67 0.673251
Target:  5'- cUCGcCUGagucagCCUCcGGGCCGCGcGCCGc -3'
miRNA:   3'- -GGCuGGCa-----GGAGuCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 123749 0.69 0.544551
Target:  5'- uCCGGuCCagcaCCUCGGuGcGCCGCGcGCCGGu -3'
miRNA:   3'- -GGCU-GGca--GGAGUC-C-CGGCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 21964 0.69 0.553587
Target:  5'- -gGGCCGUCgUCggcaggacggugAGGGCCGCcacGGCCa- -3'
miRNA:   3'- ggCUGGCAGgAG------------UCCCGGCG---CCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.