miRNA display CGI


Results 61 - 80 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 101966 0.78 0.164761
Target:  5'- uCCGAauauaUCGUCCUCAGGGCCGacgaggacgucgauaUGGCCGa -3'
miRNA:   3'- -GGCU-----GGCAGGAGUCCCGGC---------------GCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 169102 0.72 0.392726
Target:  5'- uUGGCCacGUCCUgAcagacgcGGGCCGCGGCCa- -3'
miRNA:   3'- gGCUGG--CAGGAgU-------CCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 60767 0.74 0.309073
Target:  5'- -aGGCCG-Ca-CAGGGCCGCGGCCu- -3'
miRNA:   3'- ggCUGGCaGgaGUCCCGGCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 110127 0.67 0.654813
Target:  5'- -aGAgCGUCUUCuccGGCCGCG-CCGGc -3'
miRNA:   3'- ggCUgGCAGGAGuc-CCGGCGCcGGCC- -5'
16018 3' -63.8 NC_004065.1 + 149699 0.7 0.474331
Target:  5'- gUGAaCG-CCggGGGGCCGCGGCCGc -3'
miRNA:   3'- gGCUgGCaGGagUCCCGGCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 128711 0.66 0.709745
Target:  5'- uUCGGCUccgCUUCAGGGagagGCGGCUGGc -3'
miRNA:   3'- -GGCUGGca-GGAGUCCCgg--CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120574 0.66 0.709745
Target:  5'- gCGGgCGggaCCUCcGGcGCCGgucuCGGCCGGg -3'
miRNA:   3'- gGCUgGCa--GGAGuCC-CGGC----GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 135324 0.66 0.718751
Target:  5'- cUCGAgCCGcCCUCcaaggucaGGGGCCGCgagaucaaGGCCa- -3'
miRNA:   3'- -GGCU-GGCaGGAG--------UCCCGGCG--------CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 212993 0.66 0.727696
Target:  5'- cCUGGUCGUaCUCAaGGUCGUGGUCGGg -3'
miRNA:   3'- -GGCUGGCAgGAGUcCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163271 0.66 0.731256
Target:  5'- -aGACCGUCUcuUCggucgcgacgccgccGGGGuCCGaCGGCaCGGg -3'
miRNA:   3'- ggCUGGCAGG--AG---------------UCCC-GGC-GCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 229344 0.66 0.745377
Target:  5'- cCCgGGCgGUCgCUCGaccagcgagcGGGUgcucgcuacgCGCGGCCGGa -3'
miRNA:   3'- -GG-CUGgCAG-GAGU----------CCCG----------GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 66125 0.66 0.745377
Target:  5'- aCCGaggcGCUGgcgcgCuGGGCCGCGGaCCGGc -3'
miRNA:   3'- -GGC----UGGCagga-GuCCCGGCGCC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 32809 0.65 0.751491
Target:  5'- gUCG-UCGUCCUCGuagccgucGGGCCGCucguccgagaagguGaGCCGGu -3'
miRNA:   3'- -GGCuGGCAGGAGU--------CCCGGCG--------------C-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 83280 0.67 0.654813
Target:  5'- cUCGACCGgCCUC---GCgGCGGCCGa -3'
miRNA:   3'- -GGCUGGCaGGAGuccCGgCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 26892 0.67 0.654813
Target:  5'- gCCGGCCGgUC-CAGaGGCCGCucgaccgcacGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGaGUC-CCGGCGc---------CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 113285 0.67 0.65389
Target:  5'- gCgGAUCGUCUUCAccaugacGGGCgacgccgcuCGCGcGCCGGa -3'
miRNA:   3'- -GgCUGGCAGGAGU-------CCCG---------GCGC-CGGCC- -5'
16018 3' -63.8 NC_004065.1 + 116810 0.67 0.645569
Target:  5'- uUGGCCGguaCCgacCGGGGCagCGUGGCCGu -3'
miRNA:   3'- gGCUGGCa--GGa--GUCCCG--GCGCCGGCc -5'
16018 3' -63.8 NC_004065.1 + 78625 0.67 0.642794
Target:  5'- cCCGACCGacccgCCUCcGccacccaagagaucGGCCGCcagcgcagcGGCCGGc -3'
miRNA:   3'- -GGCUGGCa----GGAGuC--------------CCGGCG---------CCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 200842 0.68 0.633539
Target:  5'- aCGACCcgguggaguucggcGUCgaCGGGGgCGCGGgCGGu -3'
miRNA:   3'- gGCUGG--------------CAGgaGUCCCgGCGCCgGCC- -5'
16018 3' -63.8 NC_004065.1 + 182415 0.68 0.62706
Target:  5'- uUGugUGUCCUCgaGGGGgCGCugggcaGCCGGg -3'
miRNA:   3'- gGCugGCAGGAG--UCCCgGCGc-----CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.