miRNA display CGI


Results 81 - 100 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 3' -63.8 NC_004065.1 + 119060 0.66 0.700686
Target:  5'- uCUGAcCCGUCCUCAGcugcacGGUgCGCGGCaugaccacgCGGa -3'
miRNA:   3'- -GGCU-GGCAGGAGUC------CCG-GCGCCG---------GCC- -5'
16018 3' -63.8 NC_004065.1 + 21316 0.66 0.700686
Target:  5'- aCGACCG-CCUCGGcGUgCGCGGCgGu -3'
miRNA:   3'- gGCUGGCaGGAGUCcCG-GCGCCGgCc -5'
16018 3' -63.8 NC_004065.1 + 128711 0.66 0.709745
Target:  5'- uUCGGCUccgCUUCAGGGagagGCGGCUGGc -3'
miRNA:   3'- -GGCUGGca-GGAGUCCCgg--CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 120574 0.66 0.709745
Target:  5'- gCGGgCGggaCCUCcGGcGCCGgucuCGGCCGGg -3'
miRNA:   3'- gGCUgGCa--GGAGuCC-CGGC----GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 135324 0.66 0.718751
Target:  5'- cUCGAgCCGcCCUCcaaggucaGGGGCCGCgagaucaaGGCCa- -3'
miRNA:   3'- -GGCU-GGCaGGAG--------UCCCGGCG--------CCGGcc -5'
16018 3' -63.8 NC_004065.1 + 212993 0.66 0.727696
Target:  5'- cCUGGUCGUaCUCAaGGUCGUGGUCGGg -3'
miRNA:   3'- -GGCUGGCAgGAGUcCCGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 163271 0.66 0.731256
Target:  5'- -aGACCGUCUcuUCggucgcgacgccgccGGGGuCCGaCGGCaCGGg -3'
miRNA:   3'- ggCUGGCAGG--AG---------------UCCC-GGC-GCCG-GCC- -5'
16018 3' -63.8 NC_004065.1 + 229344 0.66 0.745377
Target:  5'- cCCgGGCgGUCgCUCGaccagcgagcGGGUgcucgcuacgCGCGGCCGGa -3'
miRNA:   3'- -GG-CUGgCAG-GAGU----------CCCG----------GCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 66125 0.66 0.745377
Target:  5'- aCCGaggcGCUGgcgcgCuGGGCCGCGGaCCGGc -3'
miRNA:   3'- -GGC----UGGCagga-GuCCCGGCGCC-GGCC- -5'
16018 3' -63.8 NC_004065.1 + 110302 0.67 0.69158
Target:  5'- cCCGGCCGUCacgguCUCGcaGCUcUGGCCGGg -3'
miRNA:   3'- -GGCUGGCAG-----GAGUccCGGcGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 60082 0.67 0.69158
Target:  5'- gCCGcGCuCGUCgUCgucgaagaggucGGGGUagaaGCGGCCGGc -3'
miRNA:   3'- -GGC-UG-GCAGgAG------------UCCCGg---CGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 223860 0.67 0.654813
Target:  5'- cUCGGCCGcCCggCccGGCCaucuCGGCCGGa -3'
miRNA:   3'- -GGCUGGCaGGa-GucCCGGc---GCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 470 0.67 0.673251
Target:  5'- cUCGcCUGagucagCCUCcGGGCCGCGcGCCGc -3'
miRNA:   3'- -GGCuGGCa-----GGAGuCCCGGCGC-CGGCc -5'
16018 3' -63.8 NC_004065.1 + 110177 0.67 0.673251
Target:  5'- cCCGACC-UCUgCGGcGGCCGCGacgcGCCGc -3'
miRNA:   3'- -GGCUGGcAGGaGUC-CCGGCGC----CGGCc -5'
16018 3' -63.8 NC_004065.1 + 18084 0.67 0.682432
Target:  5'- gCGACCG-CCgCAGccUCGUGGCCGGc -3'
miRNA:   3'- gGCUGGCaGGaGUCccGGCGCCGGCC- -5'
16018 3' -63.8 NC_004065.1 + 53839 0.67 0.682432
Target:  5'- gCGACCGUgCCaacucuucgCGGcGGUCGCG-CCGGg -3'
miRNA:   3'- gGCUGGCA-GGa--------GUC-CCGGCGCcGGCC- -5'
16018 3' -63.8 NC_004065.1 + 5 0.67 0.682432
Target:  5'- cCCGGCCGUCUg-AGuGCgCGCGGgcccCCGGg -3'
miRNA:   3'- -GGCUGGCAGGagUCcCG-GCGCC----GGCC- -5'
16018 3' -63.8 NC_004065.1 + 31074 0.67 0.682432
Target:  5'- aCG-CCuUCCUCAuGGCgGCGGCCu- -3'
miRNA:   3'- gGCuGGcAGGAGUcCCGgCGCCGGcc -5'
16018 3' -63.8 NC_004065.1 + 41357 0.67 0.682432
Target:  5'- aCGACCGUCgUCucccGCCGCGcGCCc- -3'
miRNA:   3'- gGCUGGCAGgAGucc-CGGCGC-CGGcc -5'
16018 3' -63.8 NC_004065.1 + 36108 0.67 0.69158
Target:  5'- gUGGCgG-CaaCGGGGCCGCuGCCGGc -3'
miRNA:   3'- gGCUGgCaGgaGUCCCGGCGcCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.