Results 101 - 106 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 3' | -63.8 | NC_004065.1 | + | 18084 | 0.67 | 0.682432 |
Target: 5'- gCGACCG-CCgCAGccUCGUGGCCGGc -3' miRNA: 3'- gGCUGGCaGGaGUCccGGCGCCGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 53839 | 0.67 | 0.682432 |
Target: 5'- gCGACCGUgCCaacucuucgCGGcGGUCGCG-CCGGg -3' miRNA: 3'- gGCUGGCA-GGa--------GUC-CCGGCGCcGGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 5 | 0.67 | 0.682432 |
Target: 5'- cCCGGCCGUCUg-AGuGCgCGCGGgcccCCGGg -3' miRNA: 3'- -GGCUGGCAGGagUCcCG-GCGCC----GGCC- -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 31074 | 0.67 | 0.682432 |
Target: 5'- aCG-CCuUCCUCAuGGCgGCGGCCu- -3' miRNA: 3'- gGCuGGcAGGAGUcCCGgCGCCGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 41357 | 0.67 | 0.682432 |
Target: 5'- aCGACCGUCgUCucccGCCGCGcGCCc- -3' miRNA: 3'- gGCUGGCAGgAGucc-CGGCGC-CGGcc -5' |
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16018 | 3' | -63.8 | NC_004065.1 | + | 32809 | 0.65 | 0.751491 |
Target: 5'- gUCG-UCGUCCUCGuagccgucGGGCCGCucguccgagaagguGaGCCGGu -3' miRNA: 3'- -GGCuGGCAGGAGU--------CCCGGCG--------------C-CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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