miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 63077 0.66 0.984784
Target:  5'- uCGCCGGuCGCCGGCg-AgcGACGGgCGu -3'
miRNA:   3'- -GUGGCU-GCGGCUGgaUuuCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 77730 0.66 0.984784
Target:  5'- gCACCGcCGCCG-CCgcAGGACuGGgCGa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauUUCUG-CCaGC- -5'
16018 5' -54.7 NC_004065.1 + 202586 0.66 0.984784
Target:  5'- gACCaGGCGCCGACaacucgcGGGCGGacaUCGu -3'
miRNA:   3'- gUGG-CUGCGGCUGgauu---UCUGCC---AGC- -5'
16018 5' -54.7 NC_004065.1 + 6531 0.66 0.984784
Target:  5'- gACCGGCgaucuGCUGGuCCc-GAGACGGUCu -3'
miRNA:   3'- gUGGCUG-----CGGCU-GGauUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 138229 0.66 0.984784
Target:  5'- uCugCGAUGUCGaggcgcucgccGCCgucGAGGAgGGUCGg -3'
miRNA:   3'- -GugGCUGCGGC-----------UGGa--UUUCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 60181 0.66 0.984784
Target:  5'- -gUCGACGCUGGCCcgcacGGCGGUg- -3'
miRNA:   3'- guGGCUGCGGCUGGauuu-CUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 104610 0.66 0.984612
Target:  5'- gCGCUGGCGCCGGCCgacuuccacgaccuGCGGgCGa -3'
miRNA:   3'- -GUGGCUGCGGCUGGauuuc---------UGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 170639 0.66 0.982994
Target:  5'- gACCaGAgGCCGAgacaCCUAGcguacguGAUGGUCGa -3'
miRNA:   3'- gUGG-CUgCGGCU----GGAUUu------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 136561 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 136488 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 23888 0.66 0.982994
Target:  5'- -cUCGAUaGCCGGCgUUAcAGAUGGUCGa -3'
miRNA:   3'- guGGCUG-CGGCUG-GAUuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 143880 0.66 0.982994
Target:  5'- --aCGGCGCCGGCgUGAAGAaaaaaGUCa -3'
miRNA:   3'- gugGCUGCGGCUGgAUUUCUgc---CAGc -5'
16018 5' -54.7 NC_004065.1 + 108970 0.66 0.982994
Target:  5'- gGCaCGACGCCaGGCUccgacgAAGGGCGGgCGa -3'
miRNA:   3'- gUG-GCUGCGG-CUGGa-----UUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 179436 0.66 0.982807
Target:  5'- gGCCGGCGCCcgaagacaguaggGugCUcGAGGAUGGgagCGu -3'
miRNA:   3'- gUGGCUGCGG-------------CugGA-UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 46288 0.66 0.981049
Target:  5'- gGCCGugGgCGACCU--GGACcuGUCu -3'
miRNA:   3'- gUGGCugCgGCUGGAuuUCUGc-CAGc -5'
16018 5' -54.7 NC_004065.1 + 72100 0.66 0.981049
Target:  5'- gGCCuGAuCGCCaGACUggacagGAGGACGGUgGa -3'
miRNA:   3'- gUGG-CU-GCGG-CUGGa-----UUUCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 83279 0.66 0.981049
Target:  5'- cCGCCGACGCCcACaUAGAuGugGG-CGa -3'
miRNA:   3'- -GUGGCUGCGGcUGgAUUU-CugCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 159313 0.66 0.981049
Target:  5'- cCACCG-UGuCCGugCgc-AGGCGGUUGg -3'
miRNA:   3'- -GUGGCuGC-GGCugGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 205923 0.66 0.981049
Target:  5'- gGCCGACGUCGGCgCcauGGACGuccUCGg -3'
miRNA:   3'- gUGGCUGCGGCUG-GauuUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 24862 0.66 0.981049
Target:  5'- gCGgCGACGgCGGCCUc--GACGGUgGc -3'
miRNA:   3'- -GUgGCUGCgGCUGGAuuuCUGCCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.