miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 63077 0.66 0.984784
Target:  5'- uCGCCGGuCGCCGGCg-AgcGACGGgCGu -3'
miRNA:   3'- -GUGGCU-GCGGCUGgaUuuCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 23888 0.66 0.982994
Target:  5'- -cUCGAUaGCCGGCgUUAcAGAUGGUCGa -3'
miRNA:   3'- guGGCUG-CGGCUG-GAUuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 179436 0.66 0.982807
Target:  5'- gGCCGGCGCCcgaagacaguaggGugCUcGAGGAUGGgagCGu -3'
miRNA:   3'- gUGGCUGCGG-------------CugGA-UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 100019 0.66 0.978943
Target:  5'- uCGCCGGCucGUCGcuGCCUcgGGGCGGUa- -3'
miRNA:   3'- -GUGGCUG--CGGC--UGGAuuUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 152534 0.66 0.978943
Target:  5'- cCGCCGGCGCCGGCUUcuu--CGG-Ca -3'
miRNA:   3'- -GUGGCUGCGGCUGGAuuucuGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 83279 0.66 0.981049
Target:  5'- cCGCCGACGCCcACaUAGAuGugGG-CGa -3'
miRNA:   3'- -GUGGCUGCGGcUGgAUUU-CugCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 136488 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 77730 0.66 0.984784
Target:  5'- gCACCGcCGCCG-CCgcAGGACuGGgCGa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauUUCUG-CCaGC- -5'
16018 5' -54.7 NC_004065.1 + 153941 0.66 0.976668
Target:  5'- -cCCGAgCGCCucaagGACCUcAAGAgGGUCu -3'
miRNA:   3'- guGGCU-GCGG-----CUGGAuUUCUgCCAGc -5'
16018 5' -54.7 NC_004065.1 + 123211 0.66 0.978943
Target:  5'- -uCCG-CGUCGACCUA---ACGGUCc -3'
miRNA:   3'- guGGCuGCGGCUGGAUuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 133376 0.66 0.980435
Target:  5'- cCGCCGACGCCGAgaaagagcucgcgaCCgccggcgacGAGGACgaaggGGUCa -3'
miRNA:   3'- -GUGGCUGCGGCU--------------GGa--------UUUCUG-----CCAGc -5'
16018 5' -54.7 NC_004065.1 + 24862 0.66 0.981049
Target:  5'- gCGgCGACGgCGGCCUc--GACGGUgGc -3'
miRNA:   3'- -GUgGCUGCgGCUGGAuuuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 159313 0.66 0.981049
Target:  5'- cCACCG-UGuCCGugCgc-AGGCGGUUGg -3'
miRNA:   3'- -GUGGCuGC-GGCugGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 136561 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 143136 0.67 0.971585
Target:  5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3'
miRNA:   3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 76377 0.67 0.968765
Target:  5'- gCGCCGGCGCCG-CCgc-GGAUGaGcUCGc -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCUGC-C-AGC- -5'
16018 5' -54.7 NC_004065.1 + 63889 0.67 0.965751
Target:  5'- cCGCCGGCGCCGACgucuCUGccGACGuGauUCa -3'
miRNA:   3'- -GUGGCUGCGGCUG----GAUuuCUGC-C--AGc -5'
16018 5' -54.7 NC_004065.1 + 80398 0.67 0.965751
Target:  5'- uGCCGACGgCG-CCggu-GACGGUgGa -3'
miRNA:   3'- gUGGCUGCgGCuGGauuuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 81669 0.67 0.965751
Target:  5'- uCGCUGACGCUgacggaccggguGACC-AAGGACGG-CGn -3'
miRNA:   3'- -GUGGCUGCGG------------CUGGaUUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 31641 0.67 0.962538
Target:  5'- --aCGACGCCGGgCUAcGGGAC-GUCGg -3'
miRNA:   3'- gugGCUGCGGCUgGAU-UUCUGcCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.