miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 82788 0.67 0.974217
Target:  5'- cCGgUGGCGCCGACCcauccgGGGGugGGg-- -3'
miRNA:   3'- -GUgGCUGCGGCUGGa-----UUUCugCCagc -5'
16018 5' -54.7 NC_004065.1 + 166310 0.67 0.974217
Target:  5'- --aCGGCGCCGACCaccAGGCGaUCa -3'
miRNA:   3'- gugGCUGCGGCUGGauuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 153859 0.67 0.962538
Target:  5'- gAUCGACGCUGAUCgcgacGAcGACGGUgGu -3'
miRNA:   3'- gUGGCUGCGGCUGGa----UUuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 122480 0.67 0.965751
Target:  5'- -cCCGguaGCGCaCGACCcgcagcuGGGCGGUCGc -3'
miRNA:   3'- guGGC---UGCG-GCUGGauu----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 195849 0.67 0.962538
Target:  5'- gCGCCGGCGCCGuCaacuc-ACGGUCu -3'
miRNA:   3'- -GUGGCUGCGGCuGgauuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 91605 0.67 0.965751
Target:  5'- uCAUCGGCGuCCuGACCgcgccgcaGAAGucGCGGUCGa -3'
miRNA:   3'- -GUGGCUGC-GG-CUGGa-------UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 114183 0.67 0.962538
Target:  5'- aGCgCGcCGCCGGCCgcgaGGAGAUGGcUCa -3'
miRNA:   3'- gUG-GCuGCGGCUGGa---UUUCUGCC-AGc -5'
16018 5' -54.7 NC_004065.1 + 184912 0.67 0.971312
Target:  5'- gCGCCcggGugGCucgggagCGGCCgGGAGACGGUCu -3'
miRNA:   3'- -GUGG---CugCG-------GCUGGaUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 211931 0.68 0.947606
Target:  5'- gACagaGAUGCCGGCCacgAGGcugcGGCGGUCGc -3'
miRNA:   3'- gUGg--CUGCGGCUGGa--UUU----CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 140011 0.68 0.951659
Target:  5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3'
miRNA:   3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5'
16018 5' -54.7 NC_004065.1 + 84316 0.68 0.949253
Target:  5'- cCACCGACcucuccuccuacccCCGACCcguUAgcGGCGGUCGu -3'
miRNA:   3'- -GUGGCUGc-------------GGCUGG---AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 76532 0.68 0.943335
Target:  5'- gACCGAUGCCcuGACUcuUGgcGAUGGUCa -3'
miRNA:   3'- gUGGCUGCGG--CUGG--AUuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 60940 0.68 0.938382
Target:  5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3'
miRNA:   3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 130483 0.68 0.958768
Target:  5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3'
miRNA:   3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 65444 0.68 0.959121
Target:  5'- gGCCGugGUgGcUCUGGAGcgcgaaGCGGUCGg -3'
miRNA:   3'- gUGGCugCGgCuGGAUUUC------UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 68868 0.68 0.947606
Target:  5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3'
miRNA:   3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 32894 0.68 0.947606
Target:  5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3'
miRNA:   3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 66435 0.68 0.947606
Target:  5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 54369 0.68 0.947606
Target:  5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3'
miRNA:   3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 82963 0.68 0.943335
Target:  5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3'
miRNA:   3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.