miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 20019 0.7 0.881698
Target:  5'- uGCUGACGCUGuuGCCUuugagaucGGGCGGUUGa -3'
miRNA:   3'- gUGGCUGCGGC--UGGAuu------UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 13708 0.7 0.874793
Target:  5'- uCACCGACGCCGAaaagUCUAcAGAUGaUCa -3'
miRNA:   3'- -GUGGCUGCGGCU----GGAUuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 173633 0.69 0.918643
Target:  5'- uCGCCGcGCGuCCGACCgaaugugucGGAUGGUCu -3'
miRNA:   3'- -GUGGC-UGC-GGCUGGauu------UCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 142344 0.69 0.918643
Target:  5'- aCGCCGGCGgCGAgagcaCCgucAGAGauGCGGUCGg -3'
miRNA:   3'- -GUGGCUGCgGCU-----GGa--UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 100472 0.69 0.913033
Target:  5'- aCACCGGCaUCGGCCcGAucGGACGGcUCGu -3'
miRNA:   3'- -GUGGCUGcGGCUGGaUU--UCUGCC-AGC- -5'
16018 5' -54.7 NC_004065.1 + 35181 0.69 0.913033
Target:  5'- gCACCGAaaacgauCCGACCgac-GACGGUCa -3'
miRNA:   3'- -GUGGCUgc-----GGCUGGauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 30853 0.69 0.934128
Target:  5'- aGCCGACGaCGaccaGCCUGucGACGG-CGg -3'
miRNA:   3'- gUGGCUGCgGC----UGGAUuuCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 19102 0.69 0.924029
Target:  5'- uCACUGACcgagaugauCCGGCCacGAGACGGUCc -3'
miRNA:   3'- -GUGGCUGc--------GGCUGGauUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 42100 0.69 0.924029
Target:  5'- uCGCCGGCGCCGACgUAcguGACcGUUu -3'
miRNA:   3'- -GUGGCUGCGGCUGgAUuu-CUGcCAGc -5'
16018 5' -54.7 NC_004065.1 + 208709 0.69 0.924029
Target:  5'- cCGCCG-CGCaCG-CC--GAGGCGGUCGu -3'
miRNA:   3'- -GUGGCuGCG-GCuGGauUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 207787 0.69 0.929191
Target:  5'- gACCauguugGGCGCCGGCacgauGACGGUCa -3'
miRNA:   3'- gUGG------CUGCGGCUGgauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 144229 0.69 0.918643
Target:  5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 64179 0.69 0.918643
Target:  5'- gACCGuccggcccCGCCGucCCUAGuGACGGUCu -3'
miRNA:   3'- gUGGCu-------GCGGCu-GGAUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 66548 0.69 0.918643
Target:  5'- cCACCGGCGCCG-CC----GACGGagcUCGa -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuuCUGCC---AGC- -5'
16018 5' -54.7 NC_004065.1 + 25816 0.69 0.924029
Target:  5'- gACCGACaagGCCGACUaucaucccGACGGUCu -3'
miRNA:   3'- gUGGCUG---CGGCUGGauuu----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 147349 0.69 0.913033
Target:  5'- aGCCGugGCCGACCcugcgcaccAGA-GGUUGg -3'
miRNA:   3'- gUGGCugCGGCUGGauu------UCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 19167 0.69 0.934128
Target:  5'- uGCCGAUGCCGcuuUCUGccGAGGCGGg-- -3'
miRNA:   3'- gUGGCUGCGGCu--GGAU--UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 142428 0.69 0.929191
Target:  5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3'
miRNA:   3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5'
16018 5' -54.7 NC_004065.1 + 76418 0.69 0.929191
Target:  5'- gCGCCGcccgaGCCGACCcGAucAGuCGGUCGu -3'
miRNA:   3'- -GUGGCug---CGGCUGGaUU--UCuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.