miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 144229 0.69 0.918643
Target:  5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 208709 0.69 0.924029
Target:  5'- cCGCCG-CGCaCG-CC--GAGGCGGUCGu -3'
miRNA:   3'- -GUGGCuGCG-GCuGGauUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 32894 0.68 0.947606
Target:  5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3'
miRNA:   3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 143962 0.68 0.938843
Target:  5'- uCGCCGAcaucCGCgagcucaaCGACCUgcaGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCU----GCG--------GCUGGA---UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 75755 0.68 0.959121
Target:  5'- uGCCccaGCGCUGACCcgggGGAGGCGGaggCGg -3'
miRNA:   3'- gUGGc--UGCGGCUGGa---UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 58018 0.68 0.959121
Target:  5'- uGCCGcuucCGCCGccACCUu--GAUGGUCGu -3'
miRNA:   3'- gUGGCu---GCGGC--UGGAuuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 85807 0.68 0.959121
Target:  5'- aACCGGCGUCGGCg-AGAGucuCGaGUCGa -3'
miRNA:   3'- gUGGCUGCGGCUGgaUUUCu--GC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 98014 0.68 0.959121
Target:  5'- uCACCacCGCCGGCgCgu--GGCGGUCGu -3'
miRNA:   3'- -GUGGcuGCGGCUG-GauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 170258 0.68 0.959121
Target:  5'- gGCCGugGCCGccGCCgccaccaucGGccacGCGGUCGg -3'
miRNA:   3'- gUGGCugCGGC--UGGauu------UC----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 55630 0.68 0.959121
Target:  5'- gACaCGcACGCCuuGACCaUGAAGACGGgcUCGa -3'
miRNA:   3'- gUG-GC-UGCGG--CUGG-AUUUCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 490 0.68 0.955496
Target:  5'- gGCCGcGCGCCGcguCCgcggGAAGGCGGg-- -3'
miRNA:   3'- gUGGC-UGCGGCu--GGa---UUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 197743 0.68 0.955496
Target:  5'- uGgCGAuCGCCGACUcc-AGGCGGUCc -3'
miRNA:   3'- gUgGCU-GCGGCUGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 98246 0.68 0.959121
Target:  5'- uGCCGACGaCGGCUc-GGGACGG-CGg -3'
miRNA:   3'- gUGGCUGCgGCUGGauUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 68868 0.68 0.947606
Target:  5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3'
miRNA:   3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 60940 0.68 0.938382
Target:  5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3'
miRNA:   3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 82963 0.68 0.943335
Target:  5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3'
miRNA:   3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 54369 0.68 0.947606
Target:  5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3'
miRNA:   3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 66435 0.68 0.947606
Target:  5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 140011 0.68 0.951659
Target:  5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3'
miRNA:   3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.