miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 130483 0.68 0.958768
Target:  5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3'
miRNA:   3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 102091 0.68 0.959121
Target:  5'- aCGCCGACGCgggcggcgaUGGCCggaccGAGGugcGCGGUCa -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGa----UUUC---UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 98014 0.68 0.959121
Target:  5'- uCACCacCGCCGGCgCgu--GGCGGUCGu -3'
miRNA:   3'- -GUGGcuGCGGCUG-GauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 98246 0.68 0.959121
Target:  5'- uGCCGACGaCGGCUc-GGGACGG-CGg -3'
miRNA:   3'- gUGGCUGCgGCUGGauUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 85807 0.68 0.959121
Target:  5'- aACCGGCGUCGGCg-AGAGucuCGaGUCGa -3'
miRNA:   3'- gUGGCUGCGGCUGgaUUUCu--GC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 55630 0.68 0.959121
Target:  5'- gACaCGcACGCCuuGACCaUGAAGACGGgcUCGa -3'
miRNA:   3'- gUG-GC-UGCGG--CUGG-AUUUCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 143962 0.68 0.938843
Target:  5'- uCGCCGAcaucCGCgagcucaaCGACCUgcaGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCU----GCG--------GCUGGA---UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 198344 0.68 0.946769
Target:  5'- gCACCGACGCaccuucgcuuggGACCgccGGGUGGUCGg -3'
miRNA:   3'- -GUGGCUGCGg-----------CUGGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 104277 0.68 0.943335
Target:  5'- aUACaCGACGCCGGgcccugUCUGGAGGCGuUCGc -3'
miRNA:   3'- -GUG-GCUGCGGCU------GGAUUUCUGCcAGC- -5'
16018 5' -54.7 NC_004065.1 + 76532 0.68 0.943335
Target:  5'- gACCGAUGCCcuGACUcuUGgcGAUGGUCa -3'
miRNA:   3'- gUGGCUGCGG--CUGG--AUuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 123116 0.67 0.971585
Target:  5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3'
miRNA:   3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5'
16018 5' -54.7 NC_004065.1 + 184912 0.67 0.971312
Target:  5'- gCGCCcggGugGCucgggagCGGCCgGGAGACGGUCu -3'
miRNA:   3'- -GUGG---CugCG-------GCUGGaUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 114183 0.67 0.962538
Target:  5'- aGCgCGcCGCCGGCCgcgaGGAGAUGGcUCa -3'
miRNA:   3'- gUG-GCuGCGGCUGGa---UUUCUGCC-AGc -5'
16018 5' -54.7 NC_004065.1 + 126729 0.67 0.968765
Target:  5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3'
miRNA:   3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 64150 0.67 0.968765
Target:  5'- cCGCUGGcCGCCGACCUGGucuCGGa-- -3'
miRNA:   3'- -GUGGCU-GCGGCUGGAUUucuGCCagc -5'
16018 5' -54.7 NC_004065.1 + 50588 0.67 0.974217
Target:  5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3'
miRNA:   3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 143136 0.67 0.971585
Target:  5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3'
miRNA:   3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 44354 0.67 0.971585
Target:  5'- uCGCCGACGagaagaUCGACCUcAGGGACGucuUCGa -3'
miRNA:   3'- -GUGGCUGC------GGCUGGA-UUUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 115200 0.67 0.971585
Target:  5'- gGCCGugGCCG-CCgc--GACGGg-- -3'
miRNA:   3'- gUGGCugCGGCuGGauuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 107150 0.67 0.971585
Target:  5'- uCGCCGAacagcuccaacuCGCUcugccGCCaGAGGGCGGUCGa -3'
miRNA:   3'- -GUGGCU------------GCGGc----UGGaUUUCUGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.