miRNA display CGI


Results 21 - 40 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 66750 0.72 0.812695
Target:  5'- cCGgCGGCGUcgCGACCgaaGAGACGGUCu -3'
miRNA:   3'- -GUgGCUGCG--GCUGGau-UUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 24502 0.72 0.820238
Target:  5'- cCGCCGgcccugaGCGCCGGCCccAAGAUGG-CGg -3'
miRNA:   3'- -GUGGC-------UGCGGCUGGauUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 78605 0.71 0.836526
Target:  5'- aACgCGACGUCGucgcgccGCCUGAGGugaacGCGGUCGg -3'
miRNA:   3'- gUG-GCUGCGGC-------UGGAUUUC-----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 102429 0.71 0.837323
Target:  5'- aGCCGGCGCCuccccucugcGACCUGAAcGGCGugccGUCGu -3'
miRNA:   3'- gUGGCUGCGG----------CUGGAUUU-CUGC----CAGC- -5'
16018 5' -54.7 NC_004065.1 + 173913 0.71 0.837323
Target:  5'- gCGCCGcCGUCGuCCg--GGACGGUCa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 122269 0.71 0.837323
Target:  5'- gCGCCGACaCCGACCUGGGGcauccgcCGGcCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAUUUCu------GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 30789 0.71 0.852878
Target:  5'- aCGCCGACGaugaCGACUgacGGACGGaCGg -3'
miRNA:   3'- -GUGGCUGCg---GCUGGauuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 25220 0.71 0.860378
Target:  5'- gCGCCGAUGCCGACgaAGcccgGGAuCGaGUCGg -3'
miRNA:   3'- -GUGGCUGCGGCUGgaUU----UCU-GC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 118718 0.71 0.866963
Target:  5'- aCGCCGACgagauccuuGCCGGCggaggugUUGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCUG---------CGGCUG-------GAUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 100578 0.7 0.873387
Target:  5'- aGCgCGACGCCggaGACCUuagguaugauGGCGGUCGc -3'
miRNA:   3'- gUG-GCUGCGG---CUGGAuuu-------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 13708 0.7 0.874793
Target:  5'- uCACCGACGCCGAaaagUCUAcAGAUGaUCa -3'
miRNA:   3'- -GUGGCUGCGGCU----GGAUuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 87697 0.7 0.881698
Target:  5'- cCGCCGGCGUucgaGACCUc---GCGGUCGa -3'
miRNA:   3'- -GUGGCUGCGg---CUGGAuuucUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 32402 0.7 0.881698
Target:  5'- cCGCCGACGUacuucgcguUGACCUGccacGAGACGGa-- -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGAU----UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 20019 0.7 0.881698
Target:  5'- uGCUGACGCUGuuGCCUuugagaucGGGCGGUUGa -3'
miRNA:   3'- gUGGCUGCGGC--UGGAuu------UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 73143 0.7 0.888395
Target:  5'- -cCCGACGCgCGACCccAGGAuuCGGUCc -3'
miRNA:   3'- guGGCUGCG-GCUGGauUUCU--GCCAGc -5'
16018 5' -54.7 NC_004065.1 + 380 0.7 0.898668
Target:  5'- cCACUGcCGCCGGCCgggauggcgcacGAGACGGUg- -3'
miRNA:   3'- -GUGGCuGCGGCUGGau----------UUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 86157 0.7 0.90115
Target:  5'- aCGCCGGCGCCGuuCUu--GGCGGa-- -3'
miRNA:   3'- -GUGGCUGCGGCugGAuuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 194463 0.7 0.90115
Target:  5'- cCGCCuGugGCCG-CCUucucGGAGAUGGUUa -3'
miRNA:   3'- -GUGG-CugCGGCuGGA----UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 216847 0.7 0.905409
Target:  5'- gACgGACGCCGcuguacgguuucucACCgguuuGACGGUCGu -3'
miRNA:   3'- gUGgCUGCGGC--------------UGGauuu-CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 24434 0.7 0.907202
Target:  5'- uGCCGACGuaGACCUcgGGAGGCuGG-CGg -3'
miRNA:   3'- gUGGCUGCggCUGGA--UUUCUG-CCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.