miRNA display CGI


Results 81 - 100 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 130483 0.68 0.958768
Target:  5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3'
miRNA:   3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 98014 0.68 0.959121
Target:  5'- uCACCacCGCCGGCgCgu--GGCGGUCGu -3'
miRNA:   3'- -GUGGcuGCGGCUG-GauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 98246 0.68 0.959121
Target:  5'- uGCCGACGaCGGCUc-GGGACGG-CGg -3'
miRNA:   3'- gUGGCUGCgGCUGGauUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 170258 0.68 0.959121
Target:  5'- gGCCGugGCCGccGCCgccaccaucGGccacGCGGUCGg -3'
miRNA:   3'- gUGGCugCGGC--UGGauu------UC----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 102091 0.68 0.959121
Target:  5'- aCGCCGACGCgggcggcgaUGGCCggaccGAGGugcGCGGUCa -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGa----UUUC---UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 75755 0.68 0.959121
Target:  5'- uGCCccaGCGCUGACCcgggGGAGGCGGaggCGg -3'
miRNA:   3'- gUGGc--UGCGGCUGGa---UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 65444 0.68 0.959121
Target:  5'- gGCCGugGUgGcUCUGGAGcgcgaaGCGGUCGg -3'
miRNA:   3'- gUGGCugCGgCuGGAUUUC------UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 55630 0.68 0.959121
Target:  5'- gACaCGcACGCCuuGACCaUGAAGACGGgcUCGa -3'
miRNA:   3'- gUG-GC-UGCGG--CUGG-AUUUCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 58018 0.68 0.959121
Target:  5'- uGCCGcuucCGCCGccACCUu--GAUGGUCGu -3'
miRNA:   3'- gUGGCu---GCGGC--UGGAuuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 85807 0.68 0.959121
Target:  5'- aACCGGCGUCGGCg-AGAGucuCGaGUCGa -3'
miRNA:   3'- gUGGCUGCGGCUGgaUUUCu--GC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 114183 0.67 0.962538
Target:  5'- aGCgCGcCGCCGGCCgcgaGGAGAUGGcUCa -3'
miRNA:   3'- gUG-GCuGCGGCUGGa---UUUCUGCC-AGc -5'
16018 5' -54.7 NC_004065.1 + 153859 0.67 0.962538
Target:  5'- gAUCGACGCUGAUCgcgacGAcGACGGUgGu -3'
miRNA:   3'- gUGGCUGCGGCUGGa----UUuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 195849 0.67 0.962538
Target:  5'- gCGCCGGCGCCGuCaacuc-ACGGUCu -3'
miRNA:   3'- -GUGGCUGCGGCuGgauuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 31641 0.67 0.962538
Target:  5'- --aCGACGCCGGgCUAcGGGAC-GUCGg -3'
miRNA:   3'- gugGCUGCGGCUgGAU-UUCUGcCAGC- -5'
16018 5' -54.7 NC_004065.1 + 122480 0.67 0.965751
Target:  5'- -cCCGguaGCGCaCGACCcgcagcuGGGCGGUCGc -3'
miRNA:   3'- guGGC---UGCG-GCUGGauu----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 91605 0.67 0.965751
Target:  5'- uCAUCGGCGuCCuGACCgcgccgcaGAAGucGCGGUCGa -3'
miRNA:   3'- -GUGGCUGC-GG-CUGGa-------UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 81669 0.67 0.965751
Target:  5'- uCGCUGACGCUgacggaccggguGACC-AAGGACGG-CGn -3'
miRNA:   3'- -GUGGCUGCGG------------CUGGaUUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 63889 0.67 0.965751
Target:  5'- cCGCCGGCGCCGACgucuCUGccGACGuGauUCa -3'
miRNA:   3'- -GUGGCUGCGGCUG----GAUuuCUGC-C--AGc -5'
16018 5' -54.7 NC_004065.1 + 80398 0.67 0.965751
Target:  5'- uGCCGACGgCG-CCggu-GACGGUgGa -3'
miRNA:   3'- gUGGCUGCgGCuGGauuuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 16725 0.67 0.965751
Target:  5'- cUACCGACGaCCGAaCCgucguccACGGUCa -3'
miRNA:   3'- -GUGGCUGC-GGCU-GGauuuc--UGCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.