Results 101 - 120 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 4428 | 0.67 | 0.96698 |
Target: 5'- gGCCuGACGCUGACCcucGGGCcucgagcucgucgcgGGUCGg -3' miRNA: 3'- gUGG-CUGCGGCUGGauuUCUG---------------CCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 64150 | 0.67 | 0.968765 |
Target: 5'- cCGCUGGcCGCCGACCUGGucuCGGa-- -3' miRNA: 3'- -GUGGCU-GCGGCUGGAUUucuGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 200012 | 0.67 | 0.968765 |
Target: 5'- cCACCG-CGCCGGu-----GACGGUCGc -3' miRNA: 3'- -GUGGCuGCGGCUggauuuCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 89166 | 0.67 | 0.968765 |
Target: 5'- uCGCUGGCGgCGGCCUucAGGGCcGUCu -3' miRNA: 3'- -GUGGCUGCgGCUGGAu-UUCUGcCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 80339 | 0.67 | 0.968765 |
Target: 5'- -cCCGGCGuUCGACCUGcAGAcccuggacaCGGUCa -3' miRNA: 3'- guGGCUGC-GGCUGGAUuUCU---------GCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 205527 | 0.67 | 0.968765 |
Target: 5'- gGCCGGCGCUcagGGCCggc-GGCGGUg- -3' miRNA: 3'- gUGGCUGCGG---CUGGauuuCUGCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 76377 | 0.67 | 0.968765 |
Target: 5'- gCGCCGGCGCCG-CCgc-GGAUGaGcUCGc -3' miRNA: 3'- -GUGGCUGCGGCuGGauuUCUGC-C-AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 126729 | 0.67 | 0.968765 |
Target: 5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3' miRNA: 3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 208248 | 0.67 | 0.968765 |
Target: 5'- gACCGAggaGCCGACg-GAAcGCGGUCa -3' miRNA: 3'- gUGGCUg--CGGCUGgaUUUcUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 77545 | 0.67 | 0.968765 |
Target: 5'- gUACCGGCGCgCGACC-GAGGGC--UCGu -3' miRNA: 3'- -GUGGCUGCG-GCUGGaUUUCUGccAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 184912 | 0.67 | 0.971312 |
Target: 5'- gCGCCcggGugGCucgggagCGGCCgGGAGACGGUCu -3' miRNA: 3'- -GUGG---CugCG-------GCUGGaUUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 107150 | 0.67 | 0.971585 |
Target: 5'- uCGCCGAacagcuccaacuCGCUcugccGCCaGAGGGCGGUCGa -3' miRNA: 3'- -GUGGCU------------GCGGc----UGGaUUUCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 115200 | 0.67 | 0.971585 |
Target: 5'- gGCCGugGCCG-CCgc--GACGGg-- -3' miRNA: 3'- gUGGCugCGGCuGGauuuCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 123116 | 0.67 | 0.971585 |
Target: 5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3' miRNA: 3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 143136 | 0.67 | 0.971585 |
Target: 5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3' miRNA: 3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 44354 | 0.67 | 0.971585 |
Target: 5'- uCGCCGACGagaagaUCGACCUcAGGGACGucuUCGa -3' miRNA: 3'- -GUGGCUGC------GGCUGGA-UUUCUGCc--AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 131853 | 0.67 | 0.971585 |
Target: 5'- aUACC-ACGCUGAgCCUAGGcGGCGGUgGc -3' miRNA: 3'- -GUGGcUGCGGCU-GGAUUU-CUGCCAgC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 42382 | 0.67 | 0.974217 |
Target: 5'- cCGCCGACaugauguacgugGCCGAUgUGAuGACGGaaUCGc -3' miRNA: 3'- -GUGGCUG------------CGGCUGgAUUuCUGCC--AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 77184 | 0.67 | 0.974217 |
Target: 5'- -uCUGGCuGCCGACCUcgaucgacguAGGACaGGUCGu -3' miRNA: 3'- guGGCUG-CGGCUGGAu---------UUCUG-CCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 50588 | 0.67 | 0.974217 |
Target: 5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3' miRNA: 3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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