miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 229310 0.66 0.980846
Target:  5'- uCACCGGCGUCGcguuacgacgggcAUCUcGAaacccGGGCGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC-------------UGGA-UU-----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 149718 0.66 0.980846
Target:  5'- gGCCG-CGCCGGCCcucGGacucauaGCGGUCc -3'
miRNA:   3'- gUGGCuGCGGCUGGauuUC-------UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 133376 0.66 0.980435
Target:  5'- cCGCCGACGCCGAgaaagagcucgcgaCCgccggcgacGAGGACgaaggGGUCa -3'
miRNA:   3'- -GUGGCUGCGGCU--------------GGa--------UUUCUG-----CCAGc -5'
16018 5' -54.7 NC_004065.1 + 172581 0.66 0.979805
Target:  5'- cCGCCGACGCUaagaaaagagacacaGACCacGAGAUGGa-- -3'
miRNA:   3'- -GUGGCUGCGG---------------CUGGauUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 174116 0.66 0.978943
Target:  5'- uGCCGGCGCgGACUccgugAGAGguGCGGcaUCGg -3'
miRNA:   3'- gUGGCUGCGgCUGGa----UUUC--UGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 152534 0.66 0.978943
Target:  5'- cCGCCGGCGCCGGCUUcuu--CGG-Ca -3'
miRNA:   3'- -GUGGCUGCGGCUGGAuuucuGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 100019 0.66 0.978943
Target:  5'- uCGCCGGCucGUCGcuGCCUcgGGGCGGUa- -3'
miRNA:   3'- -GUGGCUG--CGGC--UGGAuuUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 162133 0.66 0.978943
Target:  5'- aACCGAaGCgGACCUGAAaACGGg-- -3'
miRNA:   3'- gUGGCUgCGgCUGGAUUUcUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 123211 0.66 0.978943
Target:  5'- -uCCG-CGUCGACCUA---ACGGUCc -3'
miRNA:   3'- guGGCuGCGGCUGGAUuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 193472 0.66 0.976668
Target:  5'- aCGuuGACGUaguaGACCccgaUGucGGCGGUCGa -3'
miRNA:   3'- -GUggCUGCGg---CUGG----AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 60339 0.66 0.976668
Target:  5'- uGCCGGCGCCGuACgCguuGGugcgcACGGUCa -3'
miRNA:   3'- gUGGCUGCGGC-UG-GauuUC-----UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 167174 0.66 0.976668
Target:  5'- cCACCGcUGCCGggggaGCCUucGGGGugGGUgGg -3'
miRNA:   3'- -GUGGCuGCGGC-----UGGA--UUUCugCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 153941 0.66 0.976668
Target:  5'- -cCCGAgCGCCucaagGACCUcAAGAgGGUCu -3'
miRNA:   3'- guGGCU-GCGG-----CUGGAuUUCUgCCAGc -5'
16018 5' -54.7 NC_004065.1 + 109878 0.66 0.976668
Target:  5'- cCACCGGCGUCG-CCgc-GGcCGcGUCGg -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCuGC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 42382 0.67 0.974217
Target:  5'- cCGCCGACaugauguacgugGCCGAUgUGAuGACGGaaUCGc -3'
miRNA:   3'- -GUGGCUG------------CGGCUGgAUUuCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 166310 0.67 0.974217
Target:  5'- --aCGGCGCCGACCaccAGGCGaUCa -3'
miRNA:   3'- gugGCUGCGGCUGGauuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 82788 0.67 0.974217
Target:  5'- cCGgUGGCGCCGACCcauccgGGGGugGGg-- -3'
miRNA:   3'- -GUgGCUGCGGCUGGa-----UUUCugCCagc -5'
16018 5' -54.7 NC_004065.1 + 77184 0.67 0.974217
Target:  5'- -uCUGGCuGCCGACCUcgaucgacguAGGACaGGUCGu -3'
miRNA:   3'- guGGCUG-CGGCUGGAu---------UUCUG-CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 87607 0.67 0.974217
Target:  5'- aGCCGgcGCGCCGGCaggcgAAAGAUGGcCc -3'
miRNA:   3'- gUGGC--UGCGGCUGga---UUUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 50588 0.67 0.974217
Target:  5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3'
miRNA:   3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.