miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 87607 0.67 0.974217
Target:  5'- aGCCGgcGCGCCGGCaggcgAAAGAUGGcCc -3'
miRNA:   3'- gUGGC--UGCGGCUGga---UUUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 107150 0.67 0.971585
Target:  5'- uCGCCGAacagcuccaacuCGCUcugccGCCaGAGGGCGGUCGa -3'
miRNA:   3'- -GUGGCU------------GCGGc----UGGaUUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 143136 0.67 0.971585
Target:  5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3'
miRNA:   3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 44354 0.67 0.971585
Target:  5'- uCGCCGACGagaagaUCGACCUcAGGGACGucuUCGa -3'
miRNA:   3'- -GUGGCUGC------GGCUGGA-UUUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 115200 0.67 0.971585
Target:  5'- gGCCGugGCCG-CCgc--GACGGg-- -3'
miRNA:   3'- gUGGCugCGGCuGGauuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 123116 0.67 0.971585
Target:  5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3'
miRNA:   3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5'
16018 5' -54.7 NC_004065.1 + 131853 0.67 0.971585
Target:  5'- aUACC-ACGCUGAgCCUAGGcGGCGGUgGc -3'
miRNA:   3'- -GUGGcUGCGGCU-GGAUUU-CUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 184912 0.67 0.971312
Target:  5'- gCGCCcggGugGCucgggagCGGCCgGGAGACGGUCu -3'
miRNA:   3'- -GUGG---CugCG-------GCUGGaUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 64150 0.67 0.968765
Target:  5'- cCGCUGGcCGCCGACCUGGucuCGGa-- -3'
miRNA:   3'- -GUGGCU-GCGGCUGGAUUucuGCCagc -5'
16018 5' -54.7 NC_004065.1 + 208248 0.67 0.968765
Target:  5'- gACCGAggaGCCGACg-GAAcGCGGUCa -3'
miRNA:   3'- gUGGCUg--CGGCUGgaUUUcUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 89166 0.67 0.968765
Target:  5'- uCGCUGGCGgCGGCCUucAGGGCcGUCu -3'
miRNA:   3'- -GUGGCUGCgGCUGGAu-UUCUGcCAGc -5'
16018 5' -54.7 NC_004065.1 + 200012 0.67 0.968765
Target:  5'- cCACCG-CGCCGGu-----GACGGUCGc -3'
miRNA:   3'- -GUGGCuGCGGCUggauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 80339 0.67 0.968765
Target:  5'- -cCCGGCGuUCGACCUGcAGAcccuggacaCGGUCa -3'
miRNA:   3'- guGGCUGC-GGCUGGAUuUCU---------GCCAGc -5'
16018 5' -54.7 NC_004065.1 + 205527 0.67 0.968765
Target:  5'- gGCCGGCGCUcagGGCCggc-GGCGGUg- -3'
miRNA:   3'- gUGGCUGCGG---CUGGauuuCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 77545 0.67 0.968765
Target:  5'- gUACCGGCGCgCGACC-GAGGGC--UCGu -3'
miRNA:   3'- -GUGGCUGCG-GCUGGaUUUCUGccAGC- -5'
16018 5' -54.7 NC_004065.1 + 76377 0.67 0.968765
Target:  5'- gCGCCGGCGCCG-CCgc-GGAUGaGcUCGc -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCUGC-C-AGC- -5'
16018 5' -54.7 NC_004065.1 + 126729 0.67 0.968765
Target:  5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3'
miRNA:   3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 4428 0.67 0.96698
Target:  5'- gGCCuGACGCUGACCcucGGGCcucgagcucgucgcgGGUCGg -3'
miRNA:   3'- gUGG-CUGCGGCUGGauuUCUG---------------CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 81669 0.67 0.965751
Target:  5'- uCGCUGACGCUgacggaccggguGACC-AAGGACGG-CGn -3'
miRNA:   3'- -GUGGCUGCGG------------CUGGaUUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 63889 0.67 0.965751
Target:  5'- cCGCCGGCGCCGACgucuCUGccGACGuGauUCa -3'
miRNA:   3'- -GUGGCUGCGGCUG----GAUuuCUGC-C--AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.