Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 119896 | 0.68 | 0.955496 |
Target: 5'- uGCCGGCG-CGGCCggaGAAGACGcucUCGg -3' miRNA: 3'- gUGGCUGCgGCUGGa--UUUCUGCc--AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 140011 | 0.68 | 0.951659 |
Target: 5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3' miRNA: 3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 65326 | 0.68 | 0.951659 |
Target: 5'- gACCGGCGgCGGCggcggcagcagCUGcGGGugGGUCGg -3' miRNA: 3'- gUGGCUGCgGCUG-----------GAU-UUCugCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 84316 | 0.68 | 0.949253 |
Target: 5'- cCACCGACcucuccuccuacccCCGACCcguUAgcGGCGGUCGu -3' miRNA: 3'- -GUGGCUGc-------------GGCUGG---AUuuCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 211931 | 0.68 | 0.947606 |
Target: 5'- gACagaGAUGCCGGCCacgAGGcugcGGCGGUCGc -3' miRNA: 3'- gUGg--CUGCGGCUGGa--UUU----CUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 54369 | 0.68 | 0.947606 |
Target: 5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3' miRNA: 3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 66435 | 0.68 | 0.947606 |
Target: 5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3' miRNA: 3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 32894 | 0.68 | 0.947606 |
Target: 5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3' miRNA: 3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 68868 | 0.68 | 0.947606 |
Target: 5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3' miRNA: 3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 198344 | 0.68 | 0.946769 |
Target: 5'- gCACCGACGCaccuucgcuuggGACCgccGGGUGGUCGg -3' miRNA: 3'- -GUGGCUGCGg-----------CUGGauuUCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 82963 | 0.68 | 0.943335 |
Target: 5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3' miRNA: 3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 76532 | 0.68 | 0.943335 |
Target: 5'- gACCGAUGCCcuGACUcuUGgcGAUGGUCa -3' miRNA: 3'- gUGGCUGCGG--CUGG--AUuuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 104277 | 0.68 | 0.943335 |
Target: 5'- aUACaCGACGCCGGgcccugUCUGGAGGCGuUCGc -3' miRNA: 3'- -GUG-GCUGCGGCU------GGAUUUCUGCcAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 143962 | 0.68 | 0.938843 |
Target: 5'- uCGCCGAcaucCGCgagcucaaCGACCUgcaGAAGAUGGUCu -3' miRNA: 3'- -GUGGCU----GCG--------GCUGGA---UUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 60940 | 0.68 | 0.938382 |
Target: 5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3' miRNA: 3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 208006 | 0.69 | 0.934128 |
Target: 5'- gGCCGugGCCGGgUUAGugccGGCGG-CGa -3' miRNA: 3'- gUGGCugCGGCUgGAUUu---CUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 169856 | 0.69 | 0.934128 |
Target: 5'- gGCCaGCGUCGACCUGugcauGGCGGgCGc -3' miRNA: 3'- gUGGcUGCGGCUGGAUuu---CUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 19167 | 0.69 | 0.934128 |
Target: 5'- uGCCGAUGCCGcuuUCUGccGAGGCGGg-- -3' miRNA: 3'- gUGGCUGCGGCu--GGAU--UUCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 30853 | 0.69 | 0.934128 |
Target: 5'- aGCCGACGaCGaccaGCCUGucGACGG-CGg -3' miRNA: 3'- gUGGCUGCgGC----UGGAUuuCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142428 | 0.69 | 0.929191 |
Target: 5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3' miRNA: 3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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