miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 32402 0.7 0.881698
Target:  5'- cCGCCGACGUacuucgcguUGACCUGccacGAGACGGa-- -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGAU----UUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 32894 0.68 0.947606
Target:  5'- -uCCGAgaUGCCGuCCUGucGGgGGUCGg -3'
miRNA:   3'- guGGCU--GCGGCuGGAUuuCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 35181 0.69 0.913033
Target:  5'- gCACCGAaaacgauCCGACCgac-GACGGUCa -3'
miRNA:   3'- -GUGGCUgc-----GGCUGGauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 35186 0.78 0.51653
Target:  5'- cCGCCGugGUCGGCCUGGAGAacgUGG-CGg -3'
miRNA:   3'- -GUGGCugCGGCUGGAUUUCU---GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 42100 0.69 0.924029
Target:  5'- uCGCCGGCGCCGACgUAcguGACcGUUu -3'
miRNA:   3'- -GUGGCUGCGGCUGgAUuu-CUGcCAGc -5'
16018 5' -54.7 NC_004065.1 + 42382 0.67 0.974217
Target:  5'- cCGCCGACaugauguacgugGCCGAUgUGAuGACGGaaUCGc -3'
miRNA:   3'- -GUGGCUG------------CGGCUGgAUUuCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 44354 0.67 0.971585
Target:  5'- uCGCCGACGagaagaUCGACCUcAGGGACGucuUCGa -3'
miRNA:   3'- -GUGGCUGC------GGCUGGA-UUUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 46288 0.66 0.981049
Target:  5'- gGCCGugGgCGACCU--GGACcuGUCu -3'
miRNA:   3'- gUGGCugCgGCUGGAuuUCUGc-CAGc -5'
16018 5' -54.7 NC_004065.1 + 50588 0.67 0.974217
Target:  5'- gCACCcuacugucuucgGGCGCCGGCCUcuuccucGGGACGGagGc -3'
miRNA:   3'- -GUGG------------CUGCGGCUGGAu------UUCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 54369 0.68 0.947606
Target:  5'- aCACacaGACuCCGACCgUGAuGGCGGUCc -3'
miRNA:   3'- -GUGg--CUGcGGCUGG-AUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 55630 0.68 0.959121
Target:  5'- gACaCGcACGCCuuGACCaUGAAGACGGgcUCGa -3'
miRNA:   3'- gUG-GC-UGCGG--CUGG-AUUUCUGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 58018 0.68 0.959121
Target:  5'- uGCCGcuucCGCCGccACCUu--GAUGGUCGu -3'
miRNA:   3'- gUGGCu---GCGGC--UGGAuuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 60181 0.66 0.984784
Target:  5'- -gUCGACGCUGGCCcgcacGGCGGUg- -3'
miRNA:   3'- guGGCUGCGGCUGGauuu-CUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 60339 0.66 0.976668
Target:  5'- uGCCGGCGCCGuACgCguuGGugcgcACGGUCa -3'
miRNA:   3'- gUGGCUGCGGC-UG-GauuUC-----UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 60940 0.68 0.938382
Target:  5'- gACCaGAUGUCGAaguagauCCUcAAGACGGUCu -3'
miRNA:   3'- gUGG-CUGCGGCU-------GGAuUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 63077 0.66 0.984784
Target:  5'- uCGCCGGuCGCCGGCg-AgcGACGGgCGu -3'
miRNA:   3'- -GUGGCU-GCGGCUGgaUuuCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 63889 0.67 0.965751
Target:  5'- cCGCCGGCGCCGACgucuCUGccGACGuGauUCa -3'
miRNA:   3'- -GUGGCUGCGGCUG----GAUuuCUGC-C--AGc -5'
16018 5' -54.7 NC_004065.1 + 64150 0.67 0.968765
Target:  5'- cCGCUGGcCGCCGACCUGGucuCGGa-- -3'
miRNA:   3'- -GUGGCU-GCGGCUGGAUUucuGCCagc -5'
16018 5' -54.7 NC_004065.1 + 64179 0.69 0.918643
Target:  5'- gACCGuccggcccCGCCGucCCUAGuGACGGUCu -3'
miRNA:   3'- gUGGCu-------GCGGCu-GGAUUuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 64397 1.09 0.007237
Target:  5'- uCACCGACGCCGACCUAAAGACGGUCGa -3'
miRNA:   3'- -GUGGCUGCGGCUGGAUUUCUGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.