miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 81669 0.67 0.965751
Target:  5'- uCGCUGACGCUgacggaccggguGACC-AAGGACGG-CGn -3'
miRNA:   3'- -GUGGCUGCGG------------CUGGaUUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 81706 0.72 0.786687
Target:  5'- aCACCGugGgCGACCU---GGCGGcCGa -3'
miRNA:   3'- -GUGGCugCgGCUGGAuuuCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 82788 0.67 0.974217
Target:  5'- cCGgUGGCGCCGACCcauccgGGGGugGGg-- -3'
miRNA:   3'- -GUgGCUGCGGCUGGa-----UUUCugCCagc -5'
16018 5' -54.7 NC_004065.1 + 82963 0.68 0.943335
Target:  5'- cCACUGGUGUCGuuACCUuuGAGACGGUCc -3'
miRNA:   3'- -GUGGCUGCGGC--UGGAu-UUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 83279 0.66 0.981049
Target:  5'- cCGCCGACGCCcACaUAGAuGugGG-CGa -3'
miRNA:   3'- -GUGGCUGCGGcUGgAUUU-CugCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 84071 0.69 0.924029
Target:  5'- aGCCGAuggcucggauccUGCCGACCgucAGGGCGGcCa -3'
miRNA:   3'- gUGGCU------------GCGGCUGGau-UUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 84316 0.68 0.949253
Target:  5'- cCACCGACcucuccuccuacccCCGACCcguUAgcGGCGGUCGu -3'
miRNA:   3'- -GUGGCUGc-------------GGCUGG---AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 85807 0.68 0.959121
Target:  5'- aACCGGCGUCGGCg-AGAGucuCGaGUCGa -3'
miRNA:   3'- gUGGCUGCGGCUGgaUUUCu--GC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 86157 0.7 0.90115
Target:  5'- aCGCCGGCGCCGuuCUu--GGCGGa-- -3'
miRNA:   3'- -GUGGCUGCGGCugGAuuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 86316 0.79 0.45222
Target:  5'- uCGCCGGCGCCGACCUGGucuucgucgucAGACGuauccGUCa -3'
miRNA:   3'- -GUGGCUGCGGCUGGAUU-----------UCUGC-----CAGc -5'
16018 5' -54.7 NC_004065.1 + 87607 0.67 0.974217
Target:  5'- aGCCGgcGCGCCGGCaggcgAAAGAUGGcCc -3'
miRNA:   3'- gUGGC--UGCGGCUGga---UUUCUGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 87697 0.7 0.881698
Target:  5'- cCGCCGGCGUucgaGACCUc---GCGGUCGa -3'
miRNA:   3'- -GUGGCUGCGg---CUGGAuuucUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 89166 0.67 0.968765
Target:  5'- uCGCUGGCGgCGGCCUucAGGGCcGUCu -3'
miRNA:   3'- -GUGGCUGCgGCUGGAu-UUCUGcCAGc -5'
16018 5' -54.7 NC_004065.1 + 91605 0.67 0.965751
Target:  5'- uCAUCGGCGuCCuGACCgcgccgcaGAAGucGCGGUCGa -3'
miRNA:   3'- -GUGGCUGC-GG-CUGGa-------UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 94211 0.73 0.777747
Target:  5'- uCGCCGACGCCGAU--GAAGAuCGGagGa -3'
miRNA:   3'- -GUGGCUGCGGCUGgaUUUCU-GCCagC- -5'
16018 5' -54.7 NC_004065.1 + 94493 0.74 0.70252
Target:  5'- -uCCGACGUCGACgUc--GACGGUCGa -3'
miRNA:   3'- guGGCUGCGGCUGgAuuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 98014 0.68 0.959121
Target:  5'- uCACCacCGCCGGCgCgu--GGCGGUCGu -3'
miRNA:   3'- -GUGGcuGCGGCUG-GauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 98246 0.68 0.959121
Target:  5'- uGCCGACGaCGGCUc-GGGACGG-CGg -3'
miRNA:   3'- gUGGCUGCgGCUGGauUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 100019 0.66 0.978943
Target:  5'- uCGCCGGCucGUCGcuGCCUcgGGGCGGUa- -3'
miRNA:   3'- -GUGGCUG--CGGC--UGGAuuUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 100472 0.69 0.913033
Target:  5'- aCACCGGCaUCGGCCcGAucGGACGGcUCGu -3'
miRNA:   3'- -GUGGCUGcGGCUGGaUU--UCUGCC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.