Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 100578 | 0.7 | 0.873387 |
Target: 5'- aGCgCGACGCCggaGACCUuagguaugauGGCGGUCGc -3' miRNA: 3'- gUG-GCUGCGG---CUGGAuuu-------CUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 102091 | 0.68 | 0.959121 |
Target: 5'- aCGCCGACGCgggcggcgaUGGCCggaccGAGGugcGCGGUCa -3' miRNA: 3'- -GUGGCUGCG---------GCUGGa----UUUC---UGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 102429 | 0.71 | 0.837323 |
Target: 5'- aGCCGGCGCCuccccucugcGACCUGAAcGGCGugccGUCGu -3' miRNA: 3'- gUGGCUGCGG----------CUGGAUUU-CUGC----CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 104277 | 0.68 | 0.943335 |
Target: 5'- aUACaCGACGCCGGgcccugUCUGGAGGCGuUCGc -3' miRNA: 3'- -GUG-GCUGCGGCU------GGAUUUCUGCcAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 104610 | 0.66 | 0.984612 |
Target: 5'- gCGCUGGCGCCGGCCgacuuccacgaccuGCGGgCGa -3' miRNA: 3'- -GUGGCUGCGGCUGGauuuc---------UGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 107150 | 0.67 | 0.971585 |
Target: 5'- uCGCCGAacagcuccaacuCGCUcugccGCCaGAGGGCGGUCGa -3' miRNA: 3'- -GUGGCU------------GCGGc----UGGaUUUCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 108970 | 0.66 | 0.982994 |
Target: 5'- gGCaCGACGCCaGGCUccgacgAAGGGCGGgCGa -3' miRNA: 3'- gUG-GCUGCGG-CUGGa-----UUUCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 109878 | 0.66 | 0.976668 |
Target: 5'- cCACCGGCGUCG-CCgc-GGcCGcGUCGg -3' miRNA: 3'- -GUGGCUGCGGCuGGauuUCuGC-CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 111683 | 0.78 | 0.479276 |
Target: 5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3' miRNA: 3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 113722 | 0.72 | 0.80417 |
Target: 5'- cCGCCGACGCCGAcaCCUcGGAGAacucCGG-CGa -3' miRNA: 3'- -GUGGCUGCGGCU--GGA-UUUCU----GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 114183 | 0.67 | 0.962538 |
Target: 5'- aGCgCGcCGCCGGCCgcgaGGAGAUGGcUCa -3' miRNA: 3'- gUG-GCuGCGGCUGGa---UUUCUGCC-AGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 115200 | 0.67 | 0.971585 |
Target: 5'- gGCCGugGCCG-CCgc--GACGGg-- -3' miRNA: 3'- gUGGCugCGGCuGGauuuCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 118718 | 0.71 | 0.866963 |
Target: 5'- aCGCCGACgagauccuuGCCGGCggaggugUUGAAGAUGGUCu -3' miRNA: 3'- -GUGGCUG---------CGGCUG-------GAUUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 119896 | 0.68 | 0.955496 |
Target: 5'- uGCCGGCG-CGGCCggaGAAGACGcucUCGg -3' miRNA: 3'- gUGGCUGCgGCUGGa--UUUCUGCc--AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 122269 | 0.71 | 0.837323 |
Target: 5'- gCGCCGACaCCGACCUGGGGcauccgcCGGcCGa -3' miRNA: 3'- -GUGGCUGcGGCUGGAUUUCu------GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 122480 | 0.67 | 0.965751 |
Target: 5'- -cCCGguaGCGCaCGACCcgcagcuGGGCGGUCGc -3' miRNA: 3'- guGGC---UGCG-GCUGGauu----UCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 123116 | 0.67 | 0.971585 |
Target: 5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3' miRNA: 3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 123211 | 0.66 | 0.978943 |
Target: 5'- -uCCG-CGUCGACCUA---ACGGUCc -3' miRNA: 3'- guGGCuGCGGCUGGAUuucUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 126296 | 0.77 | 0.564621 |
Target: 5'- aACCGACGCCGAa--GGAGGCGcGUCGu -3' miRNA: 3'- gUGGCUGCGGCUggaUUUCUGC-CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 126729 | 0.67 | 0.968765 |
Target: 5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3' miRNA: 3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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