Results 101 - 120 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 130483 | 0.68 | 0.958768 |
Target: 5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3' miRNA: 3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 131853 | 0.67 | 0.971585 |
Target: 5'- aUACC-ACGCUGAgCCUAGGcGGCGGUgGc -3' miRNA: 3'- -GUGGcUGCGGCU-GGAUUU-CUGCCAgC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 133376 | 0.66 | 0.980435 |
Target: 5'- cCGCCGACGCCGAgaaagagcucgcgaCCgccggcgacGAGGACgaaggGGUCa -3' miRNA: 3'- -GUGGCUGCGGCU--------------GGa--------UUUCUG-----CCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 133643 | 0.67 | 0.974217 |
Target: 5'- uCGCCGA-GCCGAUCgagGAAGACGa--- -3' miRNA: 3'- -GUGGCUgCGGCUGGa--UUUCUGCcagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 136488 | 0.66 | 0.982994 |
Target: 5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3' miRNA: 3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 136561 | 0.66 | 0.982994 |
Target: 5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3' miRNA: 3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 138229 | 0.66 | 0.984784 |
Target: 5'- uCugCGAUGUCGaggcgcucgccGCCgucGAGGAgGGUCGg -3' miRNA: 3'- -GugGCUGCGGC-----------UGGa--UUUCUgCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 139794 | 0.76 | 0.603917 |
Target: 5'- uCGCCGACGCCGACCUcuuGGGAaacuaUGGUa- -3' miRNA: 3'- -GUGGCUGCGGCUGGAu--UUCU-----GCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 140011 | 0.68 | 0.951659 |
Target: 5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3' miRNA: 3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142344 | 0.69 | 0.918643 |
Target: 5'- aCGCCGGCGgCGAgagcaCCgucAGAGauGCGGUCGg -3' miRNA: 3'- -GUGGCUGCgGCU-----GGa--UUUC--UGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142428 | 0.69 | 0.929191 |
Target: 5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3' miRNA: 3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 143136 | 0.67 | 0.971585 |
Target: 5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3' miRNA: 3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 143880 | 0.66 | 0.982994 |
Target: 5'- --aCGGCGCCGGCgUGAAGAaaaaaGUCa -3' miRNA: 3'- gugGCUGCGGCUGgAUUUCUgc---CAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 143962 | 0.68 | 0.938843 |
Target: 5'- uCGCCGAcaucCGCgagcucaaCGACCUgcaGAAGAUGGUCu -3' miRNA: 3'- -GUGGCU----GCG--------GCUGGA---UUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 144229 | 0.69 | 0.918643 |
Target: 5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3' miRNA: 3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 147349 | 0.69 | 0.913033 |
Target: 5'- aGCCGugGCCGACCcugcgcaccAGA-GGUUGg -3' miRNA: 3'- gUGGCugCGGCUGGauu------UCUgCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 149718 | 0.66 | 0.980846 |
Target: 5'- gGCCG-CGCCGGCCcucGGacucauaGCGGUCc -3' miRNA: 3'- gUGGCuGCGGCUGGauuUC-------UGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 151381 | 0.72 | 0.786687 |
Target: 5'- gCGCUGGCgGCCGAUCUcuuggguggcGGAGGCgGGUCGg -3' miRNA: 3'- -GUGGCUG-CGGCUGGA----------UUUCUG-CCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 151526 | 0.69 | 0.929191 |
Target: 5'- gGCCGcUGCCGGCC---GGGCGGUg- -3' miRNA: 3'- gUGGCuGCGGCUGGauuUCUGCCAgc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 151973 | 0.7 | 0.907202 |
Target: 5'- aCACCccgaucACGCCGACCUGAcgcaGGACcagguaGGUCa -3' miRNA: 3'- -GUGGc-----UGCGGCUGGAUU----UCUG------CCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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