miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 229310 0.66 0.980846
Target:  5'- uCACCGGCGUCGcguuacgacgggcAUCUcGAaacccGGGCGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC-------------UGGA-UU-----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 216847 0.7 0.905409
Target:  5'- gACgGACGCCGcuguacgguuucucACCgguuuGACGGUCGu -3'
miRNA:   3'- gUGgCUGCGGC--------------UGGauuu-CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 211931 0.68 0.947606
Target:  5'- gACagaGAUGCCGGCCacgAGGcugcGGCGGUCGc -3'
miRNA:   3'- gUGg--CUGCGGCUGGa--UUU----CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 208709 0.69 0.924029
Target:  5'- cCGCCG-CGCaCG-CC--GAGGCGGUCGu -3'
miRNA:   3'- -GUGGCuGCG-GCuGGauUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 208248 0.67 0.968765
Target:  5'- gACCGAggaGCCGACg-GAAcGCGGUCa -3'
miRNA:   3'- gUGGCUg--CGGCUGgaUUUcUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 208006 0.69 0.934128
Target:  5'- gGCCGugGCCGGgUUAGugccGGCGG-CGa -3'
miRNA:   3'- gUGGCugCGGCUgGAUUu---CUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 207787 0.69 0.929191
Target:  5'- gACCauguugGGCGCCGGCacgauGACGGUCa -3'
miRNA:   3'- gUGG------CUGCGGCUGgauuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 205923 0.66 0.981049
Target:  5'- gGCCGACGUCGGCgCcauGGACGuccUCGg -3'
miRNA:   3'- gUGGCUGCGGCUG-GauuUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 205527 0.67 0.968765
Target:  5'- gGCCGGCGCUcagGGCCggc-GGCGGUg- -3'
miRNA:   3'- gUGGCUGCGG---CUGGauuuCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 203622 0.72 0.795497
Target:  5'- cCGCCGugGCgGAgUUGGAGGCGGgggCa -3'
miRNA:   3'- -GUGGCugCGgCUgGAUUUCUGCCa--Gc -5'
16018 5' -54.7 NC_004065.1 + 202586 0.66 0.984784
Target:  5'- gACCaGGCGCCGACaacucgcGGGCGGacaUCGu -3'
miRNA:   3'- gUGG-CUGCGGCUGgauu---UCUGCC---AGC- -5'
16018 5' -54.7 NC_004065.1 + 200012 0.67 0.968765
Target:  5'- cCACCG-CGCCGGu-----GACGGUCGc -3'
miRNA:   3'- -GUGGCuGCGGCUggauuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 198344 0.68 0.946769
Target:  5'- gCACCGACGCaccuucgcuuggGACCgccGGGUGGUCGg -3'
miRNA:   3'- -GUGGCUGCGg-----------CUGGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 198006 0.72 0.786687
Target:  5'- aCACUG-CGCgaUGGCCUcGGAGGCGGUCGc -3'
miRNA:   3'- -GUGGCuGCG--GCUGGA-UUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 197743 0.68 0.955496
Target:  5'- uGgCGAuCGCCGACUcc-AGGCGGUCc -3'
miRNA:   3'- gUgGCU-GCGGCUGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 195849 0.67 0.962538
Target:  5'- gCGCCGGCGCCGuCaacuc-ACGGUCu -3'
miRNA:   3'- -GUGGCUGCGGCuGgauuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 194463 0.7 0.90115
Target:  5'- cCGCCuGugGCCG-CCUucucGGAGAUGGUUa -3'
miRNA:   3'- -GUGG-CugCGGCuGGA----UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 193472 0.66 0.976668
Target:  5'- aCGuuGACGUaguaGACCccgaUGucGGCGGUCGa -3'
miRNA:   3'- -GUggCUGCGg---CUGG----AUuuCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 193386 0.72 0.792869
Target:  5'- uCGCCGACGuuGAUCUGGGGggcguguuucgcguACGGUUa -3'
miRNA:   3'- -GUGGCUGCggCUGGAUUUC--------------UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 184912 0.67 0.971312
Target:  5'- gCGCCcggGugGCucgggagCGGCCgGGAGACGGUCu -3'
miRNA:   3'- -GUGG---CugCG-------GCUGGaUUUCUGCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.