miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 182644 0.73 0.777747
Target:  5'- uGCCGACGgCGGCCgcgcuggacugUGGAGuACGGUCu -3'
miRNA:   3'- gUGGCUGCgGCUGG-----------AUUUC-UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 180477 0.7 0.907202
Target:  5'- --aCGugGCCGGcgauccCCUGcccAAGAUGGUCGg -3'
miRNA:   3'- gugGCugCGGCU------GGAU---UUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 179436 0.66 0.982807
Target:  5'- gGCCGGCGCCcgaagacaguaggGugCUcGAGGAUGGgagCGu -3'
miRNA:   3'- gUGGCUGCGG-------------CugGA-UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 174116 0.66 0.978943
Target:  5'- uGCCGGCGCgGACUccgugAGAGguGCGGcaUCGg -3'
miRNA:   3'- gUGGCUGCGgCUGGa----UUUC--UGCC--AGC- -5'
16018 5' -54.7 NC_004065.1 + 173913 0.71 0.837323
Target:  5'- gCGCCGcCGUCGuCCg--GGACGGUCa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauuUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 173633 0.69 0.918643
Target:  5'- uCGCCGcGCGuCCGACCgaaugugucGGAUGGUCu -3'
miRNA:   3'- -GUGGC-UGC-GGCUGGauu------UCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 172581 0.66 0.979805
Target:  5'- cCGCCGACGCUaagaaaagagacacaGACCacGAGAUGGa-- -3'
miRNA:   3'- -GUGGCUGCGG---------------CUGGauUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 170639 0.66 0.982994
Target:  5'- gACCaGAgGCCGAgacaCCUAGcguacguGAUGGUCGa -3'
miRNA:   3'- gUGG-CUgCGGCU----GGAUUu------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 170258 0.68 0.959121
Target:  5'- gGCCGugGCCGccGCCgccaccaucGGccacGCGGUCGg -3'
miRNA:   3'- gUGGCugCGGC--UGGauu------UC----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 169856 0.69 0.934128
Target:  5'- gGCCaGCGUCGACCUGugcauGGCGGgCGc -3'
miRNA:   3'- gUGGcUGCGGCUGGAUuu---CUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 167174 0.66 0.976668
Target:  5'- cCACCGcUGCCGggggaGCCUucGGGGugGGUgGg -3'
miRNA:   3'- -GUGGCuGCGGC-----UGGA--UUUCugCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 166310 0.67 0.974217
Target:  5'- --aCGGCGCCGACCaccAGGCGaUCa -3'
miRNA:   3'- gugGCUGCGGCUGGauuUCUGCcAGc -5'
16018 5' -54.7 NC_004065.1 + 165660 0.74 0.70252
Target:  5'- -uCCGGC-CgCGcCCUGAGGACGGUCGg -3'
miRNA:   3'- guGGCUGcG-GCuGGAUUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 162133 0.66 0.978943
Target:  5'- aACCGAaGCgGACCUGAAaACGGg-- -3'
miRNA:   3'- gUGGCUgCGgCUGGAUUUcUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 159313 0.66 0.981049
Target:  5'- cCACCG-UGuCCGugCgc-AGGCGGUUGg -3'
miRNA:   3'- -GUGGCuGC-GGCugGauuUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 153941 0.66 0.976668
Target:  5'- -cCCGAgCGCCucaagGACCUcAAGAgGGUCu -3'
miRNA:   3'- guGGCU-GCGG-----CUGGAuUUCUgCCAGc -5'
16018 5' -54.7 NC_004065.1 + 153859 0.67 0.962538
Target:  5'- gAUCGACGCUGAUCgcgacGAcGACGGUgGu -3'
miRNA:   3'- gUGGCUGCGGCUGGa----UUuCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 152534 0.66 0.978943
Target:  5'- cCGCCGGCGCCGGCUUcuu--CGG-Ca -3'
miRNA:   3'- -GUGGCUGCGGCUGGAuuucuGCCaGc -5'
16018 5' -54.7 NC_004065.1 + 151973 0.7 0.907202
Target:  5'- aCACCccgaucACGCCGACCUGAcgcaGGACcagguaGGUCa -3'
miRNA:   3'- -GUGGc-----UGCGGCUGGAUU----UCUG------CCAGc -5'
16018 5' -54.7 NC_004065.1 + 151526 0.69 0.929191
Target:  5'- gGCCGcUGCCGGCC---GGGCGGUg- -3'
miRNA:   3'- gUGGCuGCGGCUGGauuUCUGCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.