miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 151381 0.72 0.786687
Target:  5'- gCGCUGGCgGCCGAUCUcuuggguggcGGAGGCgGGUCGg -3'
miRNA:   3'- -GUGGCUG-CGGCUGGA----------UUUCUG-CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 149718 0.66 0.980846
Target:  5'- gGCCG-CGCCGGCCcucGGacucauaGCGGUCc -3'
miRNA:   3'- gUGGCuGCGGCUGGauuUC-------UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 147349 0.69 0.913033
Target:  5'- aGCCGugGCCGACCcugcgcaccAGA-GGUUGg -3'
miRNA:   3'- gUGGCugCGGCUGGauu------UCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 144229 0.69 0.918643
Target:  5'- uCGCCGACGCCGguucucgcGCCU-----CGGUCGc -3'
miRNA:   3'- -GUGGCUGCGGC--------UGGAuuucuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 143962 0.68 0.938843
Target:  5'- uCGCCGAcaucCGCgagcucaaCGACCUgcaGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCU----GCG--------GCUGGA---UUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 143880 0.66 0.982994
Target:  5'- --aCGGCGCCGGCgUGAAGAaaaaaGUCa -3'
miRNA:   3'- gugGCUGCGGCUGgAUUUCUgc---CAGc -5'
16018 5' -54.7 NC_004065.1 + 143136 0.67 0.971585
Target:  5'- gACCGGCGCCGcgACCUGcgu-CGGUg- -3'
miRNA:   3'- gUGGCUGCGGC--UGGAUuucuGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 142428 0.69 0.929191
Target:  5'- uGCCGgcGCGCCGGCUccucagggucaUGAAGGCGaUCGa -3'
miRNA:   3'- gUGGC--UGCGGCUGG-----------AUUUCUGCcAGC- -5'
16018 5' -54.7 NC_004065.1 + 142344 0.69 0.918643
Target:  5'- aCGCCGGCGgCGAgagcaCCgucAGAGauGCGGUCGg -3'
miRNA:   3'- -GUGGCUGCgGCU-----GGa--UUUC--UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 140011 0.68 0.951659
Target:  5'- aGCUGACGCCG-CCgagAAGcGACGGcuccgUCGg -3'
miRNA:   3'- gUGGCUGCGGCuGGa--UUU-CUGCC-----AGC- -5'
16018 5' -54.7 NC_004065.1 + 139794 0.76 0.603917
Target:  5'- uCGCCGACGCCGACCUcuuGGGAaacuaUGGUa- -3'
miRNA:   3'- -GUGGCUGCGGCUGGAu--UUCU-----GCCAgc -5'
16018 5' -54.7 NC_004065.1 + 138229 0.66 0.984784
Target:  5'- uCugCGAUGUCGaggcgcucgccGCCgucGAGGAgGGUCGg -3'
miRNA:   3'- -GugGCUGCGGC-----------UGGa--UUUCUgCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 136561 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 136488 0.66 0.982994
Target:  5'- aGCCGAgGCCGguaGCCggGGAGcUGGUCc -3'
miRNA:   3'- gUGGCUgCGGC---UGGa-UUUCuGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 133643 0.67 0.974217
Target:  5'- uCGCCGA-GCCGAUCgagGAAGACGa--- -3'
miRNA:   3'- -GUGGCUgCGGCUGGa--UUUCUGCcagc -5'
16018 5' -54.7 NC_004065.1 + 133376 0.66 0.980435
Target:  5'- cCGCCGACGCCGAgaaagagcucgcgaCCgccggcgacGAGGACgaaggGGUCa -3'
miRNA:   3'- -GUGGCUGCGGCU--------------GGa--------UUUCUG-----CCAGc -5'
16018 5' -54.7 NC_004065.1 + 131853 0.67 0.971585
Target:  5'- aUACC-ACGCUGAgCCUAGGcGGCGGUgGc -3'
miRNA:   3'- -GUGGcUGCGGCU-GGAUUU-CUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 130483 0.68 0.958768
Target:  5'- cCGCCGcggcgagacgggaGCGCCGACCagcuGACGGagGu -3'
miRNA:   3'- -GUGGC-------------UGCGGCUGGauuuCUGCCagC- -5'
16018 5' -54.7 NC_004065.1 + 126729 0.67 0.968765
Target:  5'- aGgCGGCGCUGAUCUcgaAGGGAUGGUg- -3'
miRNA:   3'- gUgGCUGCGGCUGGA---UUUCUGCCAgc -5'
16018 5' -54.7 NC_004065.1 + 126296 0.77 0.564621
Target:  5'- aACCGACGCCGAa--GGAGGCGcGUCGu -3'
miRNA:   3'- gUGGCUGCGGCUggaUUUCUGC-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.