miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 123211 0.66 0.978943
Target:  5'- -uCCG-CGUCGACCUA---ACGGUCc -3'
miRNA:   3'- guGGCuGCGGCUGGAUuucUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 123116 0.67 0.971585
Target:  5'- uCGCCGAUGCUGuaguuGCCgu-AGugGGUUu -3'
miRNA:   3'- -GUGGCUGCGGC-----UGGauuUCugCCAGc -5'
16018 5' -54.7 NC_004065.1 + 122480 0.67 0.965751
Target:  5'- -cCCGguaGCGCaCGACCcgcagcuGGGCGGUCGc -3'
miRNA:   3'- guGGC---UGCG-GCUGGauu----UCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 122269 0.71 0.837323
Target:  5'- gCGCCGACaCCGACCUGGGGcauccgcCGGcCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAUUUCu------GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 119896 0.68 0.955496
Target:  5'- uGCCGGCG-CGGCCggaGAAGACGcucUCGg -3'
miRNA:   3'- gUGGCUGCgGCUGGa--UUUCUGCc--AGC- -5'
16018 5' -54.7 NC_004065.1 + 118718 0.71 0.866963
Target:  5'- aCGCCGACgagauccuuGCCGGCggaggugUUGAAGAUGGUCu -3'
miRNA:   3'- -GUGGCUG---------CGGCUG-------GAUUUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 115200 0.67 0.971585
Target:  5'- gGCCGugGCCG-CCgc--GACGGg-- -3'
miRNA:   3'- gUGGCugCGGCuGGauuuCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 114183 0.67 0.962538
Target:  5'- aGCgCGcCGCCGGCCgcgaGGAGAUGGcUCa -3'
miRNA:   3'- gUG-GCuGCGGCUGGa---UUUCUGCC-AGc -5'
16018 5' -54.7 NC_004065.1 + 113722 0.72 0.80417
Target:  5'- cCGCCGACGCCGAcaCCUcGGAGAacucCGG-CGa -3'
miRNA:   3'- -GUGGCUGCGGCU--GGA-UUUCU----GCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 111683 0.78 0.479276
Target:  5'- aCGCCGACGCCGACgccaUGGAcgucGGCGGUCc -3'
miRNA:   3'- -GUGGCUGCGGCUGg---AUUU----CUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 109878 0.66 0.976668
Target:  5'- cCACCGGCGUCG-CCgc-GGcCGcGUCGg -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCuGC-CAGC- -5'
16018 5' -54.7 NC_004065.1 + 108970 0.66 0.982994
Target:  5'- gGCaCGACGCCaGGCUccgacgAAGGGCGGgCGa -3'
miRNA:   3'- gUG-GCUGCGG-CUGGa-----UUUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 107150 0.67 0.971585
Target:  5'- uCGCCGAacagcuccaacuCGCUcugccGCCaGAGGGCGGUCGa -3'
miRNA:   3'- -GUGGCU------------GCGGc----UGGaUUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 104610 0.66 0.984612
Target:  5'- gCGCUGGCGCCGGCCgacuuccacgaccuGCGGgCGa -3'
miRNA:   3'- -GUGGCUGCGGCUGGauuuc---------UGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 104277 0.68 0.943335
Target:  5'- aUACaCGACGCCGGgcccugUCUGGAGGCGuUCGc -3'
miRNA:   3'- -GUG-GCUGCGGCU------GGAUUUCUGCcAGC- -5'
16018 5' -54.7 NC_004065.1 + 102429 0.71 0.837323
Target:  5'- aGCCGGCGCCuccccucugcGACCUGAAcGGCGugccGUCGu -3'
miRNA:   3'- gUGGCUGCGG----------CUGGAUUU-CUGC----CAGC- -5'
16018 5' -54.7 NC_004065.1 + 102091 0.68 0.959121
Target:  5'- aCGCCGACGCgggcggcgaUGGCCggaccGAGGugcGCGGUCa -3'
miRNA:   3'- -GUGGCUGCG---------GCUGGa----UUUC---UGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 100578 0.7 0.873387
Target:  5'- aGCgCGACGCCggaGACCUuagguaugauGGCGGUCGc -3'
miRNA:   3'- gUG-GCUGCGG---CUGGAuuu-------CUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 100472 0.69 0.913033
Target:  5'- aCACCGGCaUCGGCCcGAucGGACGGcUCGu -3'
miRNA:   3'- -GUGGCUGcGGCUGGaUU--UCUGCC-AGC- -5'
16018 5' -54.7 NC_004065.1 + 100019 0.66 0.978943
Target:  5'- uCGCCGGCucGUCGcuGCCUcgGGGCGGUa- -3'
miRNA:   3'- -GUGGCUG--CGGC--UGGAuuUCUGCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.