miRNA display CGI


Results 101 - 120 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16018 5' -54.7 NC_004065.1 + 79520 0.75 0.633616
Target:  5'- uCGCCGAgguaCGCaCGGCCgagcgggaGAAGGCGGUCGa -3'
miRNA:   3'- -GUGGCU----GCG-GCUGGa-------UUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 78605 0.71 0.836526
Target:  5'- aACgCGACGUCGucgcgccGCCUGAGGugaacGCGGUCGg -3'
miRNA:   3'- gUG-GCUGCGGC-------UGGAUUUC-----UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 77730 0.66 0.984784
Target:  5'- gCACCGcCGCCG-CCgcAGGACuGGgCGa -3'
miRNA:   3'- -GUGGCuGCGGCuGGauUUCUG-CCaGC- -5'
16018 5' -54.7 NC_004065.1 + 77545 0.67 0.968765
Target:  5'- gUACCGGCGCgCGACC-GAGGGC--UCGu -3'
miRNA:   3'- -GUGGCUGCG-GCUGGaUUUCUGccAGC- -5'
16018 5' -54.7 NC_004065.1 + 77184 0.67 0.974217
Target:  5'- -uCUGGCuGCCGACCUcgaucgacguAGGACaGGUCGu -3'
miRNA:   3'- guGGCUG-CGGCUGGAu---------UUCUG-CCAGC- -5'
16018 5' -54.7 NC_004065.1 + 76532 0.68 0.943335
Target:  5'- gACCGAUGCCcuGACUcuUGgcGAUGGUCa -3'
miRNA:   3'- gUGGCUGCGG--CUGG--AUuuCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 76418 0.69 0.929191
Target:  5'- gCGCCGcccgaGCCGACCcGAucAGuCGGUCGu -3'
miRNA:   3'- -GUGGCug---CGGCUGGaUU--UCuGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 76377 0.67 0.968765
Target:  5'- gCGCCGGCGCCG-CCgc-GGAUGaGcUCGc -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuUCUGC-C-AGC- -5'
16018 5' -54.7 NC_004065.1 + 75755 0.68 0.959121
Target:  5'- uGCCccaGCGCUGACCcgggGGAGGCGGaggCGg -3'
miRNA:   3'- gUGGc--UGCGGCUGGa---UUUCUGCCa--GC- -5'
16018 5' -54.7 NC_004065.1 + 73143 0.7 0.888395
Target:  5'- -cCCGACGCgCGACCccAGGAuuCGGUCc -3'
miRNA:   3'- guGGCUGCG-GCUGGauUUCU--GCCAGc -5'
16018 5' -54.7 NC_004065.1 + 72100 0.66 0.981049
Target:  5'- gGCCuGAuCGCCaGACUggacagGAGGACGGUgGa -3'
miRNA:   3'- gUGG-CU-GCGG-CUGGa-----UUUCUGCCAgC- -5'
16018 5' -54.7 NC_004065.1 + 68868 0.68 0.947606
Target:  5'- gACCGAggaccUGCUGuACCUGcAGACGGcCGa -3'
miRNA:   3'- gUGGCU-----GCGGC-UGGAUuUCUGCCaGC- -5'
16018 5' -54.7 NC_004065.1 + 66750 0.72 0.812695
Target:  5'- cCGgCGGCGUcgCGACCgaaGAGACGGUCu -3'
miRNA:   3'- -GUgGCUGCG--GCUGGau-UUCUGCCAGc -5'
16018 5' -54.7 NC_004065.1 + 66548 0.69 0.918643
Target:  5'- cCACCGGCGCCG-CC----GACGGagcUCGa -3'
miRNA:   3'- -GUGGCUGCGGCuGGauuuCUGCC---AGC- -5'
16018 5' -54.7 NC_004065.1 + 66435 0.68 0.947606
Target:  5'- uCACCGAC-CUGACUUucucGAcGCGGUCGa -3'
miRNA:   3'- -GUGGCUGcGGCUGGAu---UUcUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 65444 0.68 0.959121
Target:  5'- gGCCGugGUgGcUCUGGAGcgcgaaGCGGUCGg -3'
miRNA:   3'- gUGGCugCGgCuGGAUUUC------UGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 65326 0.68 0.951659
Target:  5'- gACCGGCGgCGGCggcggcagcagCUGcGGGugGGUCGg -3'
miRNA:   3'- gUGGCUGCgGCUG-----------GAU-UUCugCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 64606 0.72 0.786687
Target:  5'- gCGgCGACGcCCGcCCUAGAGACGGa-- -3'
miRNA:   3'- -GUgGCUGC-GGCuGGAUUUCUGCCagc -5'
16018 5' -54.7 NC_004065.1 + 64397 1.09 0.007237
Target:  5'- uCACCGACGCCGACCUAAAGACGGUCGa -3'
miRNA:   3'- -GUGGCUGCGGCUGGAUUUCUGCCAGC- -5'
16018 5' -54.7 NC_004065.1 + 64179 0.69 0.918643
Target:  5'- gACCGuccggcccCGCCGucCCUAGuGACGGUCu -3'
miRNA:   3'- gUGGCu-------GCGGCu-GGAUUuCUGCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.