Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16018 | 5' | -54.7 | NC_004065.1 | + | 76418 | 0.69 | 0.929191 |
Target: 5'- gCGCCGcccgaGCCGACCcGAucAGuCGGUCGu -3' miRNA: 3'- -GUGGCug---CGGCUGGaUU--UCuGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 42100 | 0.69 | 0.924029 |
Target: 5'- uCGCCGGCGCCGACgUAcguGACcGUUu -3' miRNA: 3'- -GUGGCUGCGGCUGgAUuu-CUGcCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 25220 | 0.71 | 0.860378 |
Target: 5'- gCGCCGAUGCCGACgaAGcccgGGAuCGaGUCGg -3' miRNA: 3'- -GUGGCUGCGGCUGgaUU----UCU-GC-CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 122269 | 0.71 | 0.837323 |
Target: 5'- gCGCCGACaCCGACCUGGGGcauccgcCGGcCGa -3' miRNA: 3'- -GUGGCUGcGGCUGGAUUUCu------GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 102429 | 0.71 | 0.837323 |
Target: 5'- aGCCGGCGCCuccccucugcGACCUGAAcGGCGugccGUCGu -3' miRNA: 3'- gUGGCUGCGG----------CUGGAUUU-CUGC----CAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 24502 | 0.72 | 0.820238 |
Target: 5'- cCGCCGgcccugaGCGCCGGCCccAAGAUGG-CGg -3' miRNA: 3'- -GUGGC-------UGCGGCUGGauUUCUGCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 113722 | 0.72 | 0.80417 |
Target: 5'- cCGCCGACGCCGAcaCCUcGGAGAacucCGG-CGa -3' miRNA: 3'- -GUGGCUGCGGCU--GGA-UUUCU----GCCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 64606 | 0.72 | 0.786687 |
Target: 5'- gCGgCGACGcCCGcCCUAGAGACGGa-- -3' miRNA: 3'- -GUgGCUGC-GGCuGGAUUUCUGCCagc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 24112 | 0.74 | 0.70252 |
Target: 5'- gCGCCGACGUCGGCCUc--GGCGGcCc -3' miRNA: 3'- -GUGGCUGCGGCUGGAuuuCUGCCaGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 31659 | 0.76 | 0.603917 |
Target: 5'- gCGuuGACGCCGACCacccGGCGGUCc -3' miRNA: 3'- -GUggCUGCGGCUGGauuuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 13708 | 0.7 | 0.874793 |
Target: 5'- uCACCGACGCCGAaaagUCUAcAGAUGaUCa -3' miRNA: 3'- -GUGGCUGCGGCU----GGAUuUCUGCcAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 20019 | 0.7 | 0.881698 |
Target: 5'- uGCUGACGCUGuuGCCUuugagaucGGGCGGUUGa -3' miRNA: 3'- gUGGCUGCGGC--UGGAuu------UCUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 19102 | 0.69 | 0.924029 |
Target: 5'- uCACUGACcgagaugauCCGGCCacGAGACGGUCc -3' miRNA: 3'- -GUGGCUGc--------GGCUGGauUUCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 173633 | 0.69 | 0.918643 |
Target: 5'- uCGCCGcGCGuCCGACCgaaugugucGGAUGGUCu -3' miRNA: 3'- -GUGGC-UGC-GGCUGGauu------UCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 142344 | 0.69 | 0.918643 |
Target: 5'- aCGCCGGCGgCGAgagcaCCgucAGAGauGCGGUCGg -3' miRNA: 3'- -GUGGCUGCgGCU-----GGa--UUUC--UGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 100472 | 0.69 | 0.913033 |
Target: 5'- aCACCGGCaUCGGCCcGAucGGACGGcUCGu -3' miRNA: 3'- -GUGGCUGcGGCUGGaUU--UCUGCC-AGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 35181 | 0.69 | 0.913033 |
Target: 5'- gCACCGAaaacgauCCGACCgac-GACGGUCa -3' miRNA: 3'- -GUGGCUgc-----GGCUGGauuuCUGCCAGc -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 24434 | 0.7 | 0.907202 |
Target: 5'- uGCCGACGuaGACCUcgGGAGGCuGG-CGg -3' miRNA: 3'- gUGGCUGCggCUGGA--UUUCUG-CCaGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 216847 | 0.7 | 0.905409 |
Target: 5'- gACgGACGCCGcuguacgguuucucACCgguuuGACGGUCGu -3' miRNA: 3'- gUGgCUGCGGC--------------UGGauuu-CUGCCAGC- -5' |
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16018 | 5' | -54.7 | NC_004065.1 | + | 73143 | 0.7 | 0.888395 |
Target: 5'- -cCCGACGCgCGACCccAGGAuuCGGUCc -3' miRNA: 3'- guGGCUGCG-GCUGGauUUCU--GCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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